Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10741466	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831059	0.88[EUR][1000 genomes]
rs10831065	0.86[ASN][1000 genomes]
rs11020416	0.81[CHB][hapmap]
rs11822585	0.86[CEU][hapmap]
rs1939562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1939573	0.89[EUR][1000 genomes]
rs2155242	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2399689	0.88[EUR][1000 genomes]
rs4388844	0.96[EUR][1000 genomes]
rs4753481	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4753482	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4753483	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5025292	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58018625	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6483253	0.88[EUR][1000 genomes]
rs67773478	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68159082	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7108404	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109236	0.86[CEU][hapmap]
rs7115759	0.86[CEU][hapmap]
rs7130903	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72970943	0.88[EUR][1000 genomes]
rs72970947	0.88[EUR][1000 genomes]
rs72972624	0.82[EUR][1000 genomes]
rs7929512	0.88[EUR][1000 genomes]
rs7939577	0.86[CEU][hapmap]
rs7940519	0.82[ASN][1000 genomes]
rs7940754	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11020425	MED17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93319200-93323200	Enhancers	Stomach Mucosa	stomach
2	chr11:93319400-93324400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:93319600-93324400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:93320400-93324400	Weak transcription	A549	lung
5	chr11:93320600-93323400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:93321200-93323200	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:93321400-93323200	Enhancers	Fetal Intestine Small	intestine
8	chr11:93321600-93324200	Weak transcription	Small Intestine	intestine
9	chr11:93322000-93323400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr11:93322200-93323200	Enhancers	Fetal Intestine Large	intestine
11	chr11:93322800-93323000	Enhancers	Primary T cells from cord blood	blood
12	chr11:93322800-93323000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr11:93322800-93323000	Enhancers	Esophagus	oesophagus

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