Variant report

Variant	rs1939573
Chromosome Location	chr11:93363217-93363218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93356197..93359571-chr11:93360394..93364299,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10741466	0.89[EUR][1000 genomes]
rs10831059	0.85[EUR][1000 genomes]
rs11020425	0.89[EUR][1000 genomes]
rs11822585	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs1939562	0.89[EUR][1000 genomes]
rs2155242	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2399689	0.85[EUR][1000 genomes]
rs4388844	0.93[EUR][1000 genomes]
rs4753482	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4753483	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5025292	0.90[EUR][1000 genomes]
rs57014027	0.81[ASN][1000 genomes]
rs58018625	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58172303	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58671261	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61743303	0.87[EUR][1000 genomes]
rs6483253	0.85[EUR][1000 genomes]
rs67112133	0.87[EUR][1000 genomes]
rs67182840	0.87[EUR][1000 genomes]
rs67257421	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67310816	0.87[EUR][1000 genomes]
rs67437695	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67749053	0.84[EUR][1000 genomes]
rs67773478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68159082	0.93[EUR][1000 genomes]
rs7108404	0.93[EUR][1000 genomes]
rs7109236	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7115759	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs7130903	0.86[EUR][1000 genomes]
rs72970943	0.85[EUR][1000 genomes]
rs72970947	0.85[EUR][1000 genomes]
rs72972624	0.93[EUR][1000 genomes]
rs7929512	0.85[EUR][1000 genomes]
rs7930516	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7939577	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs7940754	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1939573	MED17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93356600-93364600	Weak transcription	Pancreas	Pancrea
2	chr11:93362800-93363800	Enhancers	HepG2	liver

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