Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10831059	0.88[EUR][1000 genomes]
rs10831065	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11020425	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1939562	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1939573	0.89[EUR][1000 genomes]
rs2155242	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2399689	0.88[EUR][1000 genomes]
rs4388844	0.96[EUR][1000 genomes]
rs4753481	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4753482	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4753483	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5025292	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58018625	0.84[EUR][1000 genomes]
rs6483253	0.88[EUR][1000 genomes]
rs67773478	0.89[EUR][1000 genomes]
rs68159082	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7108404	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7130903	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72970943	0.88[EUR][1000 genomes]
rs72970947	0.88[EUR][1000 genomes]
rs72972624	0.82[EUR][1000 genomes]
rs7929512	0.88[EUR][1000 genomes]
rs7940519	0.80[ASN][1000 genomes]
rs7940754	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10741466	MED17	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93323200-93329000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:93324200-93325200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:93324200-93325400	Enhancers	HepG2	liver
4	chr11:93324400-93325200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:93324400-93325200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:93324400-93325200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:93324400-93325400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:93324400-93325400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:93324400-93325800	Enhancers	GM12878-XiMat	blood
10	chr11:93325000-93325200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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