Variant report

Variant	rs10835280
Chromosome Location	chr11:28193238-28193239
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1032090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1032091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10767697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10767705	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10767710	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10767712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10835259	0.87[EUR][1000 genomes]
rs10835275	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10835282	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10835286	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835294	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10835296	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs10835298	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10835307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11030193	0.87[EUR][1000 genomes]
rs11030197	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11030201	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11030203	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11030204	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11030223	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11030227	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11030228	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11030259	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11030262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11030267	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12294035	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12360577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12361167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12806548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1384904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1483861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1564745	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1608871	0.87[EUR][1000 genomes]
rs17244296	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2046372	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2128956	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2128958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2140886	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2140887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[EUR][1000 genomes]
rs2354426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4512801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4923522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4923525	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6484352	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6484357	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6484361	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6484366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7102481	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs7105075	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7107992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7108140	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7117221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs7121923	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7127104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128488	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7129953	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7482650	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7924896	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7932126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs7944852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs960357	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs997555	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9988877	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897150	chr11:28110210-28302792	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv897151	chr11:28130191-28208464	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv897152	chr11:28130191-28218303	Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3346051	chr11:28188425-28211409	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:28162600-28196400	Weak transcription	Right Ventricle	heart
2	chr11:28166600-28197200	Weak transcription	K562	blood
3	chr11:28168400-28195800	Weak transcription	NHLF	lung
4	chr11:28168400-28202600	Weak transcription	NHDF-Ad	bronchial
5	chr11:28169000-28201000	Weak transcription	HUVEC	blood vessel
6	chr11:28170000-28194800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:28176400-28195000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:28178200-28239400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:28179400-28197600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:28179600-28194200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:28179600-28194200	Weak transcription	Gastric	stomach
12	chr11:28179800-28199200	Weak transcription	Brain Substantia Nigra	brain
13	chr11:28180000-28195200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:28180000-28196400	Weak transcription	Esophagus	oesophagus
15	chr11:28180200-28194800	Weak transcription	Left Ventricle	heart
16	chr11:28180400-28194800	Weak transcription	Primary B cells from cord blood	blood
17	chr11:28180400-28195200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:28180400-28197200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:28180400-28199600	Weak transcription	Ovary	ovary
20	chr11:28180400-28213200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:28180600-28194600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:28180600-28195400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:28180600-28196000	Weak transcription	Fetal Intestine Small	intestine
24	chr11:28180600-28196400	Weak transcription	Aorta	Aorta
25	chr11:28180600-28196800	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:28180600-28197200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:28180800-28194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:28180800-28194800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr11:28180800-28194800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:28180800-28194800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:28180800-28195400	Weak transcription	Fetal Heart	heart
32	chr11:28180800-28196400	Weak transcription	Fetal Stomach	stomach
33	chr11:28180800-28196800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:28180800-28197200	Weak transcription	Dnd41	blood
35	chr11:28180800-28198200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:28181000-28193400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:28181000-28194800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:28181000-28194800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:28181000-28194800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:28181000-28194800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:28181000-28195000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:28181000-28195200	Weak transcription	Liver	Liver
43	chr11:28181000-28195200	Weak transcription	Fetal Lung	lung
44	chr11:28181000-28196400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:28186400-28197000	Weak transcription	Hela-S3	cervix
46	chr11:28187800-28195000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:28188000-28194800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:28188000-28197800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:28189400-28196200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:28190800-28193400	Weak transcription	HepG2	liver

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