Variant report

Variant	rs7105075
Chromosome Location	chr11:28079117-28079118
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1032090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1032091	0.87[EUR][1000 genomes]
rs10767697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10767705	0.91[EUR][1000 genomes]
rs10767710	0.87[EUR][1000 genomes]
rs10835259	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835275	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10835280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10835282	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10835286	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10835294	0.91[EUR][1000 genomes]
rs10835296	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10835298	0.88[EUR][1000 genomes]
rs11030193	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11030197	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11030201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11030203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11030204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11030223	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11030227	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11030228	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11030262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes]
rs11030267	0.85[EUR][1000 genomes]
rs12294035	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12360577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12361167	0.86[EUR][1000 genomes]
rs12806548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1384904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1483861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1564745	0.87[EUR][1000 genomes]
rs1608871	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17244296	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2046372	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2128956	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2128958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2140886	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2140887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2354426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[EUR][1000 genomes]
rs4923522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4923525	0.86[EUR][1000 genomes]
rs6484352	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6484357	0.92[EUR][1000 genomes]
rs6484361	0.91[EUR][1000 genomes]
rs6484366	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7107992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[EUR][1000 genomes]
rs7108140	0.89[EUR][1000 genomes]
rs7121923	0.88[EUR][1000 genomes]
rs7127104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7128488	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7129953	0.84[EUR][1000 genomes]
rs7482650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924896	0.88[EUR][1000 genomes]
rs7944852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960357	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs997555	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832096	chr11:28020435-28155586	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv553915	chr11:28071479-28138709	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:28024200-28080400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:28024200-28099000	Weak transcription	Thymus	Thymus
3	chr11:28031200-28097400	Weak transcription	HMEC	breast
4	chr11:28032600-28079200	Weak transcription	NHDF-Ad	bronchial
5	chr11:28034000-28080400	Weak transcription	Primary B cells from cord blood	blood
6	chr11:28034000-28125800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:28037800-28102800	Weak transcription	HepG2	liver
8	chr11:28043800-28082000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:28045400-28079200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:28045400-28079800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:28045400-28080600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:28051600-28093600	Weak transcription	NHLF	lung
13	chr11:28057600-28096600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:28058200-28079200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:28058200-28080400	Weak transcription	K562	blood
16	chr11:28058200-28080800	Weak transcription	NH-A	brain
17	chr11:28058200-28108000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:28058400-28080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:28058800-28081000	Weak transcription	Fetal Thymus	thymus
20	chr11:28058800-28108600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:28059400-28080800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:28069600-28128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:28070800-28084600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr11:28071200-28079200	Weak transcription	Osteobl	bone
25	chr11:28071400-28108000	Weak transcription	NHEK	skin
26	chr11:28071800-28080800	Weak transcription	HUVEC	blood vessel
27	chr11:28071800-28093600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:28072400-28080400	Weak transcription	Hela-S3	cervix
29	chr11:28072800-28083400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:28074000-28082200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:28074000-28087000	Strong transcription	Dnd41	blood
32	chr11:28074200-28079800	Weak transcription	Fetal Intestine Small	intestine
33	chr11:28074400-28085400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:28074400-28106600	Weak transcription	Fetal Stomach	stomach
35	chr11:28074600-28097400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:28074600-28103400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:28075400-28126200	Weak transcription	Fetal Intestine Large	intestine
38	chr11:28075600-28085000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:28075600-28111800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:28075800-28083400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:28076000-28093600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:28076000-28099400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:28076600-28084000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:28077200-28079200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:28077200-28081800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:28077400-28079400	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr11:28077600-28080400	Weak transcription	GM12878-XiMat	blood
48	chr11:28077800-28084800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:28078000-28080400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:28078000-28084200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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