Variant report

Variant	rs7924896
Chromosome Location	chr11:28279095-28279096
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:28278347..28279911-chr11:28281679..28283182,2	K562	blood:

Variant related genes	Relation type
ENSG00000222385	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1032090	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1032091	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10767697	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10767705	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767710	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767712	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10835259	0.83[EUR][1000 genomes]
rs10835275	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10835280	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10835282	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10835286	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835294	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10835296	0.91[EUR][1000 genomes]
rs10835298	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835307	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10835310	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11030193	0.83[EUR][1000 genomes]
rs11030197	0.88[EUR][1000 genomes]
rs11030201	0.88[EUR][1000 genomes]
rs11030203	0.88[EUR][1000 genomes]
rs11030204	0.87[EUR][1000 genomes]
rs11030223	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11030227	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11030228	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11030259	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11030262	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11030267	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12294035	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12360577	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12361167	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12806548	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1384904	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1483861	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1564745	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1608871	0.83[EUR][1000 genomes]
rs17244296	0.88[EUR][1000 genomes]
rs2046372	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2128956	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2128958	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2140886	0.88[EUR][1000 genomes]
rs2140887	0.83[EUR][1000 genomes]
rs2354426	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4512801	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4923522	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4923525	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6484352	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6484357	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6484361	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484366	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7102481	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7105075	0.88[EUR][1000 genomes]
rs7107992	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7108140	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7117221	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7121923	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127104	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128488	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7129953	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7482650	0.88[EUR][1000 genomes]
rs7932126	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7944852	0.87[EUR][1000 genomes]
rs960357	0.89[EUR][1000 genomes]
rs997555	0.88[EUR][1000 genomes]
rs9988877	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897150	chr11:28110210-28302792	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:28251400-28279600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:28251400-28297600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:28263400-28279800	Weak transcription	Ovary	ovary
4	chr11:28264200-28282800	Weak transcription	Pancreas	Pancrea
5	chr11:28264800-28282200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:28265000-28288000	Weak transcription	Aorta	Aorta
7	chr11:28266800-28279800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:28266800-28279800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:28267600-28334000	Weak transcription	HSMM	muscle
10	chr11:28268400-28322600	Weak transcription	Left Ventricle	heart
11	chr11:28270000-28311800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:28271600-28288600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:28273000-28280000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:28273600-28282600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:28273600-28285200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:28276600-28287600	Weak transcription	HepG2	liver
17	chr11:28277200-28279600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:28277400-28283600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr11:28277600-28279800	Weak transcription	Fetal Intestine Small	intestine
20	chr11:28277800-28280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:28278000-28279800	Weak transcription	Fetal Stomach	stomach
22	chr11:28278400-28282400	Weak transcription	Gastric	stomach
23	chr11:28278400-28318400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr11:28278600-28280800	Weak transcription	Primary T cells from cord blood	blood
25	chr11:28278800-28279200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:28278800-28318000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:28279000-28279200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:28279000-28282600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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