Variant report

Variant	rs11030203
Chromosome Location	chr11:28090306-28090307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:28084824..28086707-chr11:28088104..28091052,2	K562	blood:
2	chr11:28089884..28093193-chr11:28095497..28099020,3	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1032090	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1032091	0.87[EUR][1000 genomes]
rs10767697	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767705	0.91[EUR][1000 genomes]
rs10767710	0.87[EUR][1000 genomes]
rs10835259	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10835275	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10835280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10835282	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10835286	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10835294	0.91[EUR][1000 genomes]
rs10835296	0.96[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs10835298	0.88[EUR][1000 genomes]
rs11030193	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11030197	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11030201	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11030204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11030223	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11030227	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11030228	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11030262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes]
rs11030267	0.85[EUR][1000 genomes]
rs12294035	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12360577	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12361167	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12806548	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1384904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1483861	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1564745	0.87[EUR][1000 genomes]
rs1608871	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17244296	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2046372	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2128956	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2128958	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2140886	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140887	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2354426	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.92[EUR][1000 genomes]
rs4923522	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4923525	0.86[EUR][1000 genomes]
rs6484352	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6484357	0.92[EUR][1000 genomes]
rs6484361	0.91[EUR][1000 genomes]
rs6484366	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7105075	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7107992	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.86[MKK][hapmap];0.94[YRI][hapmap];0.89[EUR][1000 genomes]
rs7108140	0.89[EUR][1000 genomes]
rs7121923	0.88[EUR][1000 genomes]
rs7127104	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.89[EUR][1000 genomes]
rs7128488	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7129953	0.84[EUR][1000 genomes]
rs7482650	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924896	0.88[EUR][1000 genomes]
rs7944852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs960357	0.96[CEU][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs997555	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832096	chr11:28020435-28155586	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv553915	chr11:28071479-28138709	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:28024200-28099000	Weak transcription	Thymus	Thymus
2	chr11:28031200-28097400	Weak transcription	HMEC	breast
3	chr11:28034000-28125800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:28037800-28102800	Weak transcription	HepG2	liver
5	chr11:28051600-28093600	Weak transcription	NHLF	lung
6	chr11:28057600-28096600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:28058200-28108000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:28058800-28108600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:28069600-28128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:28071400-28108000	Weak transcription	NHEK	skin
11	chr11:28071800-28093600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:28074400-28106600	Weak transcription	Fetal Stomach	stomach
13	chr11:28074600-28097400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:28074600-28103400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:28075400-28126200	Weak transcription	Fetal Intestine Large	intestine
16	chr11:28075600-28111800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:28076000-28093600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:28076000-28099400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:28079400-28097400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:28079600-28106800	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:28080000-28108000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:28080200-28093400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:28080200-28121400	Weak transcription	Fetal Intestine Small	intestine
24	chr11:28080400-28127400	Weak transcription	Fetal Lung	lung
25	chr11:28082400-28091000	Weak transcription	GM12878-XiMat	blood
26	chr11:28082400-28094000	Weak transcription	NH-A	brain
27	chr11:28082600-28094200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:28082600-28097400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:28082600-28101200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:28082600-28128400	Weak transcription	Primary B cells from cord blood	blood
31	chr11:28082800-28097200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:28083000-28097200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:28083000-28097600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:28083200-28097600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:28083800-28093400	Weak transcription	NHDF-Ad	bronchial
36	chr11:28083800-28097400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:28084000-28092200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:28084000-28094000	Weak transcription	HUVEC	blood vessel
39	chr11:28084000-28095000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:28084000-28096600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:28084000-28097200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:28084000-28102000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:28084200-28096600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr11:28084200-28096800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:28084200-28096800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:28084400-28096800	Weak transcription	Fetal Thymus	thymus
47	chr11:28084600-28093600	Weak transcription	Hela-S3	cervix
48	chr11:28084800-28096200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr11:28084800-28118400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:28085000-28093600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links