Variant report

Variant	rs11030197
Chromosome Location	chr11:28070980-28070981
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:28059379..28062313-chr11:28068334..28071331,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1032090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1032091	0.87[EUR][1000 genomes]
rs10767697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10767705	0.91[EUR][1000 genomes]
rs10767710	0.87[EUR][1000 genomes]
rs10835259	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835275	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10835280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10835282	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes]
rs10835286	0.93[EUR][1000 genomes]
rs10835294	0.91[EUR][1000 genomes]
rs10835296	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10835298	0.88[EUR][1000 genomes]
rs11030193	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11030201	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11030203	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11030204	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11030223	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11030227	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11030228	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11030262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs11030267	0.85[EUR][1000 genomes]
rs12294035	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12360577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12361167	0.86[EUR][1000 genomes]
rs12806548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1384904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1483861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1564745	0.87[EUR][1000 genomes]
rs1608871	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17244296	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2046372	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2128956	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2128958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2140886	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2140887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2354426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[EUR][1000 genomes]
rs4923522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4923525	0.86[EUR][1000 genomes]
rs6484352	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6484357	0.92[EUR][1000 genomes]
rs6484361	0.91[EUR][1000 genomes]
rs6484366	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7105075	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[EUR][1000 genomes]
rs7108140	0.89[EUR][1000 genomes]
rs7121923	0.88[EUR][1000 genomes]
rs7127104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7128488	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7129953	0.84[EUR][1000 genomes]
rs7482650	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924896	0.88[EUR][1000 genomes]
rs7944852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960357	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs997555	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832096	chr11:28020435-28155586	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:28024200-28080400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:28024200-28099000	Weak transcription	Thymus	Thymus
3	chr11:28031200-28097400	Weak transcription	HMEC	breast
4	chr11:28032600-28079200	Weak transcription	NHDF-Ad	bronchial
5	chr11:28034000-28080400	Weak transcription	Primary B cells from cord blood	blood
6	chr11:28034000-28125800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:28037800-28102800	Weak transcription	HepG2	liver
8	chr11:28043800-28082000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:28045400-28079200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:28045400-28079800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:28045400-28080600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:28051600-28093600	Weak transcription	NHLF	lung
13	chr11:28056400-28075800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:28057600-28096600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:28058000-28075400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:28058000-28078000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:28058200-28076400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:28058200-28078000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:28058200-28078600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:28058200-28079000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:28058200-28079200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:28058200-28080400	Weak transcription	K562	blood
23	chr11:28058200-28080800	Weak transcription	NH-A	brain
24	chr11:28058200-28108000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:28058400-28080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:28058600-28075800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:28058800-28081000	Weak transcription	Fetal Thymus	thymus
28	chr11:28058800-28108600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:28059400-28078600	Weak transcription	HSMM	muscle
30	chr11:28059400-28080800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:28060600-28075800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:28061200-28076600	Weak transcription	GM12878-XiMat	blood
33	chr11:28069200-28075800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:28069600-28072400	Enhancers	Hela-S3	cervix
35	chr11:28069600-28128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:28069800-28075600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:28070400-28071200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:28070400-28071200	Enhancers	Osteobl	bone
39	chr11:28070400-28071800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:28070400-28071800	Enhancers	HUVEC	blood vessel
41	chr11:28070400-28072000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:28070400-28072800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:28070800-28071400	Enhancers	NHEK	skin
44	chr11:28070800-28072200	Flanking Active TSS	A549	lung
45	chr11:28070800-28074000	Weak transcription	Dnd41	blood
46	chr11:28070800-28084600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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