Variant report

Variant	rs10836543
Chromosome Location	chr11:36399350-36399351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAG1-4	chr11:36399074-36400759	NONHSAT018823

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11826255	1.00[EUR][1000 genomes]
rs12288088	1.00[EUR][1000 genomes]
rs2467084	1.00[EUR][1000 genomes]
rs2554013	1.00[EUR][1000 genomes]
rs417207	1.00[EUR][1000 genomes]
rs452838	1.00[EUR][1000 genomes]
rs694109	1.00[EUR][1000 genomes]
rs960638	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36397000-36399400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36397200-36399400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:36397200-36399400	Active TSS	NH-A	brain
4	chr11:36397200-36399800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr11:36397200-36399800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr11:36397400-36399400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr11:36397400-36399400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:36397400-36399400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:36397400-36399400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:36397400-36399400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr11:36397400-36399400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:36397400-36399400	Active TSS	Ovary	ovary
13	chr11:36397400-36399400	Active TSS	Placenta Amnion	Placenta Amnion
14	chr11:36397400-36399400	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr11:36397400-36399400	Active TSS	Right Atrium	heart
16	chr11:36397400-36399600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:36397400-36399600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
18	chr11:36397400-36399800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
19	chr11:36397400-36399800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
20	chr11:36397400-36399800	Active TSS	HSMM	muscle
21	chr11:36397400-36400000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr11:36397400-36401000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:36397600-36399400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr11:36397600-36399400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:36397600-36399400	Active TSS	Esophagus	oesophagus
26	chr11:36397600-36399400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
27	chr11:36397600-36399400	Active TSS	Left Ventricle	heart
28	chr11:36397600-36399400	Active TSS	Osteobl	bone
29	chr11:36397600-36399600	Active TSS	Brain Angular Gyrus	brain
30	chr11:36397600-36399600	Active TSS	Brain Anterior Caudate	brain
31	chr11:36397600-36399600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
32	chr11:36397600-36399600	Active TSS	HSMMtube	muscle
33	chr11:36397600-36399600	Active TSS	NHDF-Ad	bronchial
34	chr11:36397600-36399800	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr11:36397600-36399800	Active TSS	Fetal Kidney	kidney
36	chr11:36397600-36399800	Bivalent/Poised TSS	A549	lung
37	chr11:36397600-36400000	Active TSS	Sigmoid Colon	Sigmoid Colon
38	chr11:36397600-36400200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
39	chr11:36397600-36402000	Active TSS	Rectal Smooth Muscle	rectum
40	chr11:36397600-36402200	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr11:36397800-36399400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:36397800-36399400	Active TSS	Brain Hippocampus Middle	brain
43	chr11:36397800-36399400	Active TSS	Brain Substantia Nigra	brain
44	chr11:36397800-36399400	Bivalent/Poised TSS	Fetal Lung	lung
45	chr11:36397800-36399400	Active TSS	Gastric	stomach
46	chr11:36397800-36399400	Active TSS	Psoas Muscle	Psoas
47	chr11:36397800-36399600	Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr11:36397800-36399600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
49	chr11:36397800-36399600	Bivalent/Poised TSS	Fetal Brain Female	brain
50	chr11:36397800-36399800	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood

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