Variant report

Variant	rs11826255
Chromosome Location	chr11:36397820-36397821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:36397752-36398192	MCF-7	breast:	n/a	n/a
2	MAX	chr11:36397811-36399582	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr11:36397651-36398136	U87	brain:	n/a	n/a
4	POLR2A	chr11:36397695-36398252	ProgFib	skin:	n/a	n/a
5	CTCF	chr11:36397680-36397830	AoAF	blood vessel:	n/a	n/a
6	POLR2A	chr11:36397458-36398247	U87	brain:	n/a	n/a
7	CHD2	chr11:36397776-36397873	Hela-S3	cervix:	n/a	n/a
8	ZNF263	chr11:36397518-36399681	HEK293-T-REx	kidney:	n/a	chr11:36397762-36397771
9	POLR2A	chr11:36397807-36398123	A549	lung:	n/a	n/a
10	MAX	chr11:36397720-36399681	A549	lung:	n/a	n/a
11	POLR2A	chr11:36397731-36398220	MCF-7	breast:	n/a	n/a
12	POLR2A	chr11:36397637-36398241	U87	brain:	n/a	n/a
13	CTBP2	chr11:36397549-36399546	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr11:36397716-36398233	HUVEC	blood vessel:	n/a	n/a
15	RAD21	chr11:36397706-36398097	IMR90	lung:	n/a	n/a
16	MAX	chr11:36397814-36399581	A549	lung:	n/a	n/a
17	POLR2A	chr11:36397402-36398245	SK-N-MC	brain:	n/a	n/a
18	POLR2A	chr11:36396755-36400145	SK-N-MC	brain:	n/a	n/a
19	SIN3A	chr11:36397442-36399495	H1-hESC	embryonic stem cell:	n/a	chr11:36397558-36397571 chr11:36399084-36399097 chr11:36398208-36398219
20	CTCF	chr11:36397680-36397830	HEEpiC	esophagus:	n/a	n/a
21	ZBTB7A	chr11:36397427-36399219	ECC-1	luminal epithelium:	n/a	chr11:36399010-36399019 chr11:36397717-36397725 chr11:36398393-36398407
22	TCF12	chr11:36397726-36398338	ECC-1	luminal epithelium:	n/a	n/a
23	MAZ	chr11:36397445-36399289	IMR90	lung:	n/a	n/a
24	POLR2A	chr11:36397651-36398117	U87	brain:	n/a	n/a
25	POLR2A	chr11:36397688-36398586	Gliobla	brain:	n/a	n/a
26	MXI1	chr11:36397658-36399802	IMR90	lung:	n/a	chr11:36399458-36399473 chr11:36399456-36399471
27	ZNF143	chr11:36397624-36398411	H1-hESC	embryonic stem cell:	n/a	chr11:36398359-36398377

Variant related genes	Relation type
PRR5L	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10836543	1.00[EUR][1000 genomes]
rs12288088	1.00[EUR][1000 genomes]
rs2467084	1.00[EUR][1000 genomes]
rs2554013	1.00[EUR][1000 genomes]
rs417207	1.00[EUR][1000 genomes]
rs452838	1.00[EUR][1000 genomes]
rs694109	0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs960638	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36396200-36398000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:36397000-36398000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
3	chr11:36397000-36399400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:36397200-36399200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr11:36397200-36399400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:36397200-36399400	Active TSS	NH-A	brain
7	chr11:36397200-36399800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr11:36397200-36399800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:36397400-36398000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:36397400-36398000	Bivalent Enhancer	Primary B cells from cord blood	blood
11	chr11:36397400-36398000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:36397400-36398000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
13	chr11:36397400-36398000	Bivalent Enhancer	Dnd41	blood
14	chr11:36397400-36398000	Bivalent Enhancer	GM12878-XiMat	blood
15	chr11:36397400-36398200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:36397400-36398200	Active TSS	Fetal Intestine Small	intestine
17	chr11:36397400-36398200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
18	chr11:36397400-36398400	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr11:36397400-36398400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:36397400-36398400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:36397400-36398400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr11:36397400-36398400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:36397400-36398600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:36397400-36398600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
25	chr11:36397400-36399200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:36397400-36399200	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr11:36397400-36399200	Active TSS	Hela-S3	cervix
28	chr11:36397400-36399200	Active TSS	NHEK	skin
29	chr11:36397400-36399400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr11:36397400-36399400	Active TSS	H9 Cell Line	embryonic stem cell
31	chr11:36397400-36399400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:36397400-36399400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
33	chr11:36397400-36399400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr11:36397400-36399400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:36397400-36399400	Active TSS	Ovary	ovary
36	chr11:36397400-36399400	Active TSS	Placenta Amnion	Placenta Amnion
37	chr11:36397400-36399400	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr11:36397400-36399400	Active TSS	Right Atrium	heart
39	chr11:36397400-36399600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
40	chr11:36397400-36399600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr11:36397400-36399800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr11:36397400-36399800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
43	chr11:36397400-36399800	Active TSS	HSMM	muscle
44	chr11:36397400-36400000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
45	chr11:36397400-36401000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:36397600-36398000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:36397600-36398000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr11:36397600-36398000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:36397600-36398000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:36397600-36398000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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