Variant report

Variant	rs417207
Chromosome Location	chr11:36374171-36374172
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10836543	1.00[EUR][1000 genomes]
rs11826255	1.00[EUR][1000 genomes]
rs12288088	1.00[EUR][1000 genomes]
rs2467084	1.00[EUR][1000 genomes]
rs2554013	1.00[EUR][1000 genomes]
rs452838	1.00[EUR][1000 genomes]
rs694109	1.00[EUR][1000 genomes]
rs960638	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3339108	chr11:36371401-36374249	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
4	esv3387126	chr11:36371851-36374249	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:36365200-36374200	Weak transcription	Brain Substantia Nigra	brain
3	chr11:36367000-36375800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:36367400-36375200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:36367400-36375600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:36367400-36375800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:36367400-36381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:36367600-36375800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:36367800-36375800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:36369400-36374200	Weak transcription	GM12878-XiMat	blood
11	chr11:36369600-36375400	Weak transcription	Fetal Intestine Small	intestine
12	chr11:36371400-36376200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:36371400-36376600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:36371600-36374200	Weak transcription	Brain Anterior Caudate	brain
15	chr11:36371600-36375400	Weak transcription	Fetal Intestine Large	intestine
16	chr11:36372000-36374200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:36372000-36374200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:36372000-36376200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:36373400-36374400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr11:36373400-36374400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr11:36373800-36376000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:36373800-36376800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:36374000-36374200	Enhancers	Hela-S3	cervix
24	chr11:36374000-36374400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:36374000-36374600	Enhancers	Primary T cells from cord blood	blood
26	chr11:36374000-36374600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr11:36374000-36375000	Bivalent Enhancer	Fetal Thymus	thymus
28	chr11:36374000-36375200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:36374000-36375200	Enhancers	Brain Hippocampus Middle	brain
30	chr11:36374000-36376600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:36374000-36376600	Enhancers	Brain Cingulate Gyrus	brain
32	chr11:36374000-36376800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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