Variant report

Variant	rs12288088
Chromosome Location	chr11:36388850-36388851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36376545..36378977-chr11:36387262..36390034,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10836543	1.00[EUR][1000 genomes]
rs11826255	1.00[EUR][1000 genomes]
rs2467084	1.00[EUR][1000 genomes]
rs2554013	1.00[EUR][1000 genomes]
rs417207	1.00[EUR][1000 genomes]
rs452838	1.00[EUR][1000 genomes]
rs694109	1.00[EUR][1000 genomes]
rs960638	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36381400-36389000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:36381600-36389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:36382800-36393800	Weak transcription	Brain Angular Gyrus	brain
5	chr11:36383800-36389000	Weak transcription	Ovary	ovary
6	chr11:36384800-36394000	Weak transcription	Gastric	stomach
7	chr11:36385200-36389400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:36385200-36393800	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:36385400-36394000	Weak transcription	Pancreas	Pancrea
10	chr11:36385600-36389000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:36385600-36389000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:36385600-36389200	Weak transcription	Spleen	Spleen
13	chr11:36386400-36393800	Weak transcription	HSMMtube	muscle
14	chr11:36386400-36394200	Weak transcription	Small Intestine	intestine
15	chr11:36386600-36389000	Weak transcription	Fetal Intestine Small	intestine
16	chr11:36386600-36393600	Weak transcription	Hela-S3	cervix
17	chr11:36386600-36394800	Weak transcription	Fetal Kidney	kidney
18	chr11:36386800-36389000	Weak transcription	Fetal Intestine Large	intestine
19	chr11:36387600-36389800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:36387600-36391600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:36387600-36393800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:36388000-36389000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:36388000-36389200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:36388000-36393800	Weak transcription	Brain Substantia Nigra	brain
25	chr11:36388000-36397200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:36388400-36393800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:36388600-36397000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links