Variant report

Variant	rs10842533
Chromosome Location	chr12:25470356-25470357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10505975	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11047951	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300542	1.00[ASN][1000 genomes]
rs3885679	0.95[EUR][1000 genomes]
rs4963606	1.00[ASN][1000 genomes]
rs4963607	1.00[ASN][1000 genomes]
rs6487472	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74070448	0.93[ASN][1000 genomes]
rs7953994	0.84[ASN][1000 genomes]
rs7967245	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25470200-25471400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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