Variant report

Variant	rs6487472
Chromosome Location	chr12:25474357-25474358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10505975	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10842533	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11047951	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300542	1.00[ASN][1000 genomes]
rs3885679	0.84[EUR][1000 genomes]
rs4963606	1.00[ASN][1000 genomes]
rs4963607	1.00[ASN][1000 genomes]
rs4963608	0.82[CEU][hapmap]
rs74070448	0.93[ASN][1000 genomes]
rs7953994	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7967245	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25471600-25475400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:25472400-25474600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr12:25472600-25474400	Flanking Active TSS	GM12878-XiMat	blood
4	chr12:25472600-25475400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr12:25472600-25475400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr12:25472600-25477000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr12:25472800-25475000	Enhancers	Fetal Heart	heart
8	chr12:25473000-25475400	Enhancers	Primary T cells from cord blood	blood
9	chr12:25473200-25475200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr12:25473200-25475400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr12:25473400-25475200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr12:25473600-25475400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr12:25473800-25474800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr12:25473800-25474800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:25473800-25475400	Weak transcription	Primary B cells from cord blood	blood
16	chr12:25473800-25475400	Weak transcription	NH-A	brain
17	chr12:25473800-25475800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:25473800-25478600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr12:25474000-25474400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr12:25474000-25475400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr12:25474200-25474600	Weak transcription	Fetal Thymus	thymus
22	chr12:25474200-25475400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr12:25474200-25475400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr12:25474200-25475600	Weak transcription	Primary hematopoietic stem cells	blood

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