Variant report

Variant	rs11047951
Chromosome Location	chr12:25470557-25470558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10505975	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10842533	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300542	1.00[ASN][1000 genomes]
rs3885679	0.84[EUR][1000 genomes]
rs4963606	1.00[ASN][1000 genomes]
rs4963607	1.00[ASN][1000 genomes]
rs4963871	0.93[GIH][hapmap]
rs6487472	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74070448	0.93[ASN][1000 genomes]
rs7953994	0.84[ASN][1000 genomes]
rs7967245	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11047951	ST8SIA1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25470200-25471400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:25470400-25471000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:25470400-25471400	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links