Variant report

Variant	rs7967245
Chromosome Location	chr12:25472547-25472548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10505975	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10842533	1.00[ASN][1000 genomes]
rs11047951	1.00[ASN][1000 genomes]
rs11047954	0.90[EUR][1000 genomes]
rs12300542	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12582102	0.84[EUR][1000 genomes]
rs4963606	1.00[ASN][1000 genomes]
rs4963607	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4963608	0.82[CEU][hapmap]
rs6487472	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487473	0.84[EUR][1000 genomes]
rs6487474	0.84[EUR][1000 genomes]
rs74070448	0.93[ASN][1000 genomes]
rs7953994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7957743	0.90[EUR][1000 genomes]
rs7970912	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25471400-25472600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:25471600-25475400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:25472000-25472600	Enhancers	GM12878-XiMat	blood
4	chr12:25472400-25472800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:25472400-25474600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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