Variant report

Variant	rs12300542
Chromosome Location	chr12:25472012-25472013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10505975	0.91[ASN][1000 genomes]
rs10842533	1.00[ASN][1000 genomes]
rs11047951	1.00[ASN][1000 genomes]
rs11047967	0.91[EUR][1000 genomes]
rs4298992	0.91[EUR][1000 genomes]
rs4569091	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4633542	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4963606	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963608	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4963871	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6487472	1.00[ASN][1000 genomes]
rs7298675	0.91[EUR][1000 genomes]
rs7313316	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74070448	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7953994	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7967245	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25471400-25472400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:25471400-25472600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:25471600-25475400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:25472000-25472600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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