Variant report

Variant	rs10864160
Chromosome Location	chr1:215375183-215375184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10458471	1.00[LWK][hapmap];0.90[YRI][hapmap]
rs10746457	1.00[AMR][1000 genomes]
rs10779653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10864171	1.00[AMR][1000 genomes]
rs1416648	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1416649	1.00[AMR][1000 genomes]
rs1538543	1.00[AMR][1000 genomes]
rs1934201	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs2225973	1.00[AMR][1000 genomes]
rs4233308	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4233310	1.00[AMR][1000 genomes]
rs4387152	1.00[AMR][1000 genomes]
rs6663635	1.00[AMR][1000 genomes]
rs6672526	1.00[AMR][1000 genomes]
rs6688065	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690720	1.00[AMR][1000 genomes]
rs7553135	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	esv2760086	chr1:215370570-215381265	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215372200-215375800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:215372800-215375400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:215373000-215375400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:215373000-215375600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:215373200-215375200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr1:215373200-215375200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:215373200-215375200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:215373400-215375200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:215373800-215375600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:215374600-215375800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:215374600-215376400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:215374800-215380000	Weak transcription	Osteobl	bone
13	chr1:215375000-215376000	Weak transcription	NHDF-Ad	bronchial
14	chr1:215375000-215379600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:215375000-215387200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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