Variant report

Variant	rs10864171
Chromosome Location	chr1:215448319-215448320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10746457	1.00[AMR][1000 genomes]
rs10779653	1.00[AMR][1000 genomes]
rs10864160	1.00[AMR][1000 genomes]
rs1416648	1.00[AMR][1000 genomes]
rs1416649	1.00[AMR][1000 genomes]
rs1538543	1.00[AMR][1000 genomes]
rs1934201	1.00[AMR][1000 genomes]
rs2225973	1.00[AMR][1000 genomes]
rs4233308	1.00[AMR][1000 genomes]
rs4233310	1.00[AMR][1000 genomes]
rs4387152	1.00[AMR][1000 genomes]
rs6663635	1.00[AMR][1000 genomes]
rs6672526	1.00[AMR][1000 genomes]
rs6688065	1.00[AMR][1000 genomes]
rs6690720	1.00[AMR][1000 genomes]
rs7553135	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215446600-215448400	Enhancers	HUVEC	blood vessel
2	chr1:215446600-215448400	Enhancers	NHEK	skin
3	chr1:215446600-215448600	Enhancers	NHDF-Ad	bronchial
4	chr1:215446600-215449000	Enhancers	Hela-S3	cervix
5	chr1:215446800-215448400	Enhancers	NH-A	brain
6	chr1:215447600-215449600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:215447800-215451200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:215448000-215450000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:215448200-215448600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:215448200-215448600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:215448200-215448600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:215448200-215450000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:215448200-215450800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:215448200-215451400	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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