Variant report

Variant	rs1934201
Chromosome Location	chr1:215396009-215396010
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10458471	0.80[YRI][hapmap]
rs10746457	1.00[AMR][1000 genomes]
rs10779653	1.00[AMR][1000 genomes]
rs10864160	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs10864171	1.00[AMR][1000 genomes]
rs1416648	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs1416649	1.00[AMR][1000 genomes]
rs1538543	1.00[AMR][1000 genomes]
rs2225973	1.00[AMR][1000 genomes]
rs4233308	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs4233310	1.00[AMR][1000 genomes]
rs4387152	1.00[AMR][1000 genomes]
rs6663635	1.00[AMR][1000 genomes]
rs6672526	1.00[AMR][1000 genomes]
rs6688065	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs6690720	1.00[AMR][1000 genomes]
rs7553135	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215380600-215408000	Weak transcription	Osteobl	bone
2	chr1:215388600-215408200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:215389200-215401400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:215392000-215408000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215394000-215407800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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