Variant report

Variant	rs1416648
Chromosome Location	chr1:215363551-215363552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10458471	0.90[YRI][hapmap]
rs10746457	1.00[AMR][1000 genomes]
rs10779653	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10864160	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10864171	1.00[AMR][1000 genomes]
rs1416649	1.00[AMR][1000 genomes]
rs1538543	1.00[AMR][1000 genomes]
rs1934201	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs2225973	1.00[AMR][1000 genomes]
rs4233308	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4233310	1.00[AMR][1000 genomes]
rs4387152	1.00[AMR][1000 genomes]
rs6663635	1.00[AMR][1000 genomes]
rs6672526	1.00[AMR][1000 genomes]
rs6688065	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690720	1.00[AMR][1000 genomes]
rs7553135	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215356000-215364800	Weak transcription	NHLF	lung
2	chr1:215356000-215368400	Weak transcription	Fetal Brain Female	brain
3	chr1:215356200-215364400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:215356200-215365200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:215362200-215363600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:215362400-215363600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:215362400-215363600	Weak transcription	NHDF-Ad	bronchial
8	chr1:215362400-215364600	Weak transcription	Osteobl	bone
9	chr1:215362400-215365200	Weak transcription	HSMM	muscle
10	chr1:215362600-215364600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:215362800-215364000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:215363000-215364000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:215363000-215364000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:215363000-215364800	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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