Variant report

Variant	rs7553135
Chromosome Location	chr1:215428071-215428072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10746457	1.00[AMR][1000 genomes]
rs10779653	1.00[AMR][1000 genomes]
rs10864160	1.00[AMR][1000 genomes]
rs10864171	1.00[AMR][1000 genomes]
rs1416648	1.00[AMR][1000 genomes]
rs1416649	1.00[AMR][1000 genomes]
rs1538543	1.00[AMR][1000 genomes]
rs1934201	1.00[AMR][1000 genomes]
rs2225973	1.00[AMR][1000 genomes]
rs4233308	1.00[AMR][1000 genomes]
rs4233310	1.00[AMR][1000 genomes]
rs4387152	1.00[AMR][1000 genomes]
rs6663635	1.00[AMR][1000 genomes]
rs6672526	1.00[AMR][1000 genomes]
rs6688065	1.00[AMR][1000 genomes]
rs6690720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	esv1008393	chr1:215426932-215429123	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215427800-215429000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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