Variant report

Variant	rs10867950
Chromosome Location	chr9:85819241-85819242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:60)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:60 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:85819047-85819270	MCF-7	breast:	n/a	n/a
2	CTCF	chr9:85819100-85819250	MCF-7	breast:	n/a	n/a
3	CTCF	chr9:85819045-85819266	MCF-7	breast:	n/a	n/a
4	CTCF	chr9:85819040-85819280	HUVEC	blood vessel:	n/a	n/a
5	CTCF	chr9:85819100-85819250	GM12873	blood:	n/a	n/a
6	RAD21	chr9:85818843-85819472	SK-N-SH	brain:	n/a	n/a
7	CTCF	chr9:85819100-85819250	AG09319	gingival:	n/a	n/a
8	RAD21	chr9:85818895-85819440	ECC-1	luminal epithelium:	n/a	n/a
9	CTCF	chr9:85819100-85819250	BE2_C	brain:	n/a	n/a
10	CTCF	chr9:85819048-85819266	MCF-7	breast:	n/a	n/a
11	RAD21	chr9:85819022-85819329	SK-N-SH_RA	brain:	n/a	n/a
12	CTCF	chr9:85819220-85819370	HFF	foreskin:	n/a	n/a
13	CTCF	chr9:85819056-85819242	MCF-7	breast:	n/a	n/a
14	CTCF	chr9:85819100-85819250	AG04449	skin:	n/a	n/a
15	CTCF	chr9:85819140-85819290	HEK293	kidney:	n/a	n/a
16	CTCF	chr9:85819100-85819250	WERI-Rb-1	eye:	n/a	n/a
17	CTCF	chr9:85819013-85819274	H1-hESC	embryonic stem cell:	n/a	n/a
18	RAD21	chr9:85819000-85819391	A549	lung:	n/a	n/a
19	RAD21	chr9:85818933-85819446	HCT-116	colon:	n/a	n/a
20	CTCF	chr9:85819075-85819253	GM19239	blood:	n/a	n/a
21	CTCF	chr9:85819140-85819290	HepG2	liver:	n/a	n/a
22	CTCF	chr9:85819100-85819250	Hela-S3	cervix:	n/a	n/a
23	CTCF	chr9:85819072-85819268	Hela-S3	cervix:	n/a	n/a
24	RAD21	chr9:85819051-85819364	Hela-S3	cervix:	n/a	n/a
25	RAD21	chr9:85819022-85819355	HepG2	liver:	n/a	n/a
26	RAD21	chr9:85819113-85819309	A549	lung:	n/a	n/a
27	CTCF	chr9:85819084-85819243	K562	blood:	n/a	n/a
28	CTCF	chr9:85818886-85819494	SK-N-SH	brain:	n/a	n/a
29	CTCF	chr9:85819120-85819270	K562	blood:	n/a	n/a
30	CTCF	chr9:85819100-85819250	A549	lung:	n/a	n/a
31	RAD21	chr9:85818873-85819439	HCT-116	colon:	n/a	n/a
32	CTCF	chr9:85819100-85819250	RPTEC	kidney:	n/a	n/a
33	CTCF	chr9:85819120-85819270	HCFaa	heart:	n/a	n/a
34	RAD21	chr9:85819035-85819339	H1-hESC	embryonic stem cell:	n/a	n/a
35	RAD21	chr9:85818996-85819310	H1-hESC	embryonic stem cell:	n/a	n/a
36	RAD21	chr9:85819027-85819420	A549	lung:	n/a	n/a
37	ZNF263	chr9:85818920-85819316	HEK293-T-REx	kidney:	n/a	chr9:85819089-85819110
38	CTCF	chr9:85819053-85819262	MCF-7	breast:	n/a	n/a
39	CTCF	chr9:85819100-85819250	HCPEpiC	choroid plexus:	n/a	n/a
40	CTCF	chr9:85819054-85819253	A549	lung:	n/a	n/a
41	RAD21	chr9:85819087-85819268	K562	blood:	n/a	n/a
42	RAD21	chr9:85819045-85819256	HepG2	liver:	n/a	n/a
43	ZNF143	chr9:85819079-85819297	GM12878	blood:	n/a	n/a
44	CTCF	chr9:85818986-85819338	GM12878	blood:	n/a	n/a
45	CTCF	chr9:85819100-85819250	HCM	heart:	n/a	n/a
46	CTCF	chr9:85819080-85819244	GM19238	blood:	n/a	n/a
47	RAD21	chr9:85819018-85819324	SK-N-SH_RA	brain:	n/a	n/a
48	CTCF	chr9:85818991-85819321	K562	blood:	n/a	n/a
49	RAD21	chr9:85819034-85819276	MCF-7	breast:	n/a	n/a
50	RAD21	chr9:85819032-85819411	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85818705..85819261-chr9:85834295..85835039,2	MCF-7	breast:

No data

Variant related genes	Relation type
RN7SKP242	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10867951	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10867960	0.88[EUR][1000 genomes]
rs11139960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139969	0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11139970	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11139972	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139974	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139984	0.88[EUR][1000 genomes]
rs11139986	0.88[EUR][1000 genomes]
rs11139987	0.88[EUR][1000 genomes]
rs11139989	0.80[EUR][1000 genomes]
rs11533044	0.88[EUR][1000 genomes]
rs12236128	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58012321	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7857822	0.80[EUR][1000 genomes]
rs8181176	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85817000-85822800	Weak transcription	HUVEC	blood vessel

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