Variant report

Variant	rs11139960
Chromosome Location	chr9:85817003-85817004
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10867950	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867951	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10867960	0.88[EUR][1000 genomes]
rs11139969	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11139970	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11139972	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11139974	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139984	0.88[EUR][1000 genomes]
rs11139986	0.88[EUR][1000 genomes]
rs11139987	0.88[EUR][1000 genomes]
rs11139989	0.80[EUR][1000 genomes]
rs11533044	0.88[EUR][1000 genomes]
rs12236128	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58012321	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7857822	0.80[EUR][1000 genomes]
rs8181176	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831642	chr9:85679425-85817338	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85815000-85817600	Weak transcription	Fetal Stomach	stomach
2	chr9:85816000-85817200	Enhancers	Brain Germinal Matrix	brain
3	chr9:85817000-85817200	Enhancers	Brain Hippocampus Middle	brain
4	chr9:85817000-85822800	Weak transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links