Variant report

Variant	rs10867960
Chromosome Location	chr9:85851428-85851429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1048228	0.82[MKK][hapmap]
rs10867950	0.94[GIH][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs10867951	0.84[EUR][1000 genomes]
rs10867953	0.86[ASW][hapmap]
rs11139960	0.88[EUR][1000 genomes]
rs11139969	0.81[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs11139970	0.81[CHB][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs11139972	0.88[EUR][1000 genomes]
rs11139974	0.86[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11139984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139986	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139989	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11533044	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12236128	0.88[EUR][1000 genomes]
rs34975489	0.88[ASN][1000 genomes]
rs58012321	0.88[EUR][1000 genomes]
rs7857822	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8181176	0.84[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85846400-85854000	Weak transcription	Pancreas	Pancrea
2	chr9:85846600-85854000	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:85846600-85854000	Weak transcription	Left Ventricle	heart
4	chr9:85846600-85854000	Weak transcription	Psoas Muscle	Psoas
5	chr9:85846600-85854000	Weak transcription	Right Atrium	heart
6	chr9:85846800-85854000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:85847200-85865400	Weak transcription	Ovary	ovary
8	chr9:85848400-85853600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:85849200-85851600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:85849800-85853600	Weak transcription	Fetal Heart	heart
11	chr9:85850000-85854000	Weak transcription	HUVEC	blood vessel
12	chr9:85850400-85853800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:85850600-85851600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:85851400-85858800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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