Variant report

Variant	rs11139974
Chromosome Location	chr9:85833585-85833586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10867950	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10867951	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10867960	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11139960	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139969	0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139970	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139972	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139984	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11139986	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11139987	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11139989	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11533044	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12236128	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58012321	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7857822	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8181176	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85824200-85834200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85827800-85833800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:85832000-85833600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:85832000-85834200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:85832000-85834200	Weak transcription	Gastric	stomach
6	chr9:85833200-85833600	Enhancers	Fetal Kidney	kidney
7	chr9:85833200-85833600	Enhancers	Pancreas	Pancrea
8	chr9:85833200-85834000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr9:85833400-85833600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:85833400-85833600	Enhancers	HepG2	liver
11	chr9:85833400-85833800	Enhancers	Esophagus	oesophagus
12	chr9:85833400-85834000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:85833400-85834000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:85833400-85834000	Enhancers	HMEC	breast
15	chr9:85833400-85834200	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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