Variant report

Variant	rs8181176
Chromosome Location	chr9:85813465-85813466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10867950	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10867951	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10867960	0.84[EUR][1000 genomes]
rs11139960	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139969	0.86[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11139970	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11139972	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11139974	0.81[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11139984	0.84[EUR][1000 genomes]
rs11139986	0.84[EUR][1000 genomes]
rs11139987	0.84[EUR][1000 genomes]
rs11533044	0.84[EUR][1000 genomes]
rs12236128	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58012321	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831642	chr9:85679425-85817338	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85811800-85813600	Enhancers	Fetal Heart	heart
2	chr9:85812200-85813600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:85812400-85813600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:85812600-85815000	Enhancers	Fetal Stomach	stomach
5	chr9:85813200-85813600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr9:85813200-85813600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:85813200-85813600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr9:85813200-85813800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:85813200-85813800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr9:85813400-85813600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr9:85813400-85813600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:85813400-85813600	Enhancers	Fetal Muscle Leg	muscle
13	chr9:85813400-85813800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:85813400-85813800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:85813400-85813800	Active TSS	Fetal Brain Female	brain
16	chr9:85813400-85814400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:85813400-85814600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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