Variant report

Variant	rs10874440
Chromosome Location	chr1:84898728-84898729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11163966	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11163977	1.00[CEU][hapmap]
rs11163983	1.00[CEU][hapmap]
rs11163984	1.00[CEU][hapmap]
rs12067077	1.00[CEU][hapmap]
rs12123829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12124848	1.00[EUR][1000 genomes]
rs12125825	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12125952	1.00[EUR][1000 genomes]
rs12129197	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv13604	chr1:84895834-84899546	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84893400-84898800	Weak transcription	HUVEC	blood vessel
2	chr1:84893400-84902400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:84893600-84898800	Weak transcription	NH-A	brain
4	chr1:84893600-84899000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:84893600-84899000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:84893800-84899200	Weak transcription	Stomach Mucosa	stomach
7	chr1:84895400-84899000	Weak transcription	Hela-S3	cervix
8	chr1:84895800-84899400	Weak transcription	Aorta	Aorta
9	chr1:84896400-84899000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:84896400-84899000	Weak transcription	Primary T cells from cord blood	blood
11	chr1:84896800-84899000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:84896800-84899000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr1:84898400-84898800	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr1:84898400-84903000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:84898600-84898800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links