Variant report

Variant	rs12123829
Chromosome Location	chr1:84891250-84891251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10874440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11163966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12124848	1.00[EUR][1000 genomes]
rs12125825	1.00[EUR][1000 genomes]
rs12125952	1.00[EUR][1000 genomes]
rs12129197	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84881600-84893000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:84889000-84893000	Weak transcription	HMEC	breast
3	chr1:84889000-84893200	Weak transcription	NHEK	skin
4	chr1:84889200-84893400	Weak transcription	Stomach Mucosa	stomach
5	chr1:84890600-84891400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:84890600-84892600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:84890600-84892600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:84890800-84891800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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