Variant report

Variant	rs12124848
Chromosome Location	chr1:84879002-84879003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10874440	1.00[EUR][1000 genomes]
rs11163966	1.00[EUR][1000 genomes]
rs12123829	1.00[EUR][1000 genomes]
rs12125825	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12125952	1.00[EUR][1000 genomes]
rs12129197	1.00[YRI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84877000-84880200	Weak transcription	HUVEC	blood vessel
2	chr1:84878600-84883200	Weak transcription	Psoas Muscle	Psoas
3	chr1:84878800-84879200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:84878800-84879200	Enhancers	Osteobl	bone
5	chr1:84878800-84880800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:84879000-84880400	Weak transcription	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links