Variant report

Variant	rs12125825
Chromosome Location	chr1:84870459-84870460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10874440	1.00[EUR][1000 genomes]
rs11163966	1.00[EUR][1000 genomes]
rs11163977	1.00[CEU][hapmap]
rs11163983	1.00[CEU][hapmap]
rs11163984	1.00[CEU][hapmap]
rs12067077	1.00[CEU][hapmap]
rs12123829	1.00[EUR][1000 genomes]
rs12124848	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12125952	1.00[EUR][1000 genomes]
rs12129197	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84863000-84871200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:84868000-84872200	Weak transcription	HUVEC	blood vessel
3	chr1:84868000-84872200	Weak transcription	NHDF-Ad	bronchial
4	chr1:84868600-84871200	Weak transcription	HMEC	breast
5	chr1:84868600-84872000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:84868600-84872000	Weak transcription	NHEK	skin
7	chr1:84869000-84872200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:84869600-84873600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:84869800-84873400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr1:84870200-84874200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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