Variant report

Variant	rs11163966
Chromosome Location	chr1:84909371-84909372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84907601..84909652-chr1:85039364..85041432,2	K562	blood:

Variant related genes	Relation type
ENSG00000117151	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10874440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12124848	1.00[EUR][1000 genomes]
rs12125825	1.00[EUR][1000 genomes]
rs12125952	1.00[EUR][1000 genomes]
rs12129197	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84907400-84909600	Enhancers	Duodenum Mucosa	Duodenum
2	chr1:84907600-84909600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:84907800-84909400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr1:84907800-84909400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:84907800-84909600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:84907800-84909600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:84907800-84909800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:84908000-84909400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:84908000-84909400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr1:84908000-84909600	Enhancers	Primary T cells from cord blood	blood
11	chr1:84908200-84909400	Enhancers	Primary B cells from cord blood	blood
12	chr1:84908200-84909400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr1:84908200-84909600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:84908200-84909600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:84908200-84909600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:84908200-84909800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:84908200-84909800	Enhancers	Primary B cells from peripheral blood	blood
18	chr1:84908400-84909400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:84908400-84909600	Enhancers	Primary T cells fromperipheralblood	blood
20	chr1:84908400-84909600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:84908400-84909600	Enhancers	Fetal Thymus	thymus
22	chr1:84908400-84909600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr1:84908600-84909600	Enhancers	Primary hematopoietic stem cells	blood
24	chr1:84908800-84909400	Enhancers	NHLF	lung
25	chr1:84909000-84912000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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