Variant report

Variant	rs10880604
Chromosome Location	chr12:44349398-44349399
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10506232	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748379	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748380	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785470	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785471	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785472	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785473	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785474	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785476	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10785477	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785478	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785479	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10785481	0.98[ASN][1000 genomes]
rs10785482	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880586	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880587	0.96[ASN][1000 genomes]
rs10880588	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880589	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880591	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880597	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880598	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880599	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880600	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880601	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880605	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11182326	0.86[EUR][1000 genomes]
rs11182327	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182328	0.86[EUR][1000 genomes]
rs11182329	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182337	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182339	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182341	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11182345	0.90[EUR][1000 genomes]
rs11182346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182358	0.96[ASN][1000 genomes]
rs11829881	0.86[EUR][1000 genomes]
rs12301015	0.86[EUR][1000 genomes]
rs12303804	0.86[EUR][1000 genomes]
rs12305959	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12309681	0.86[EUR][1000 genomes]
rs12315094	0.90[EUR][1000 genomes]
rs12369569	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1881926	0.96[ASN][1000 genomes]
rs1881927	0.96[ASN][1000 genomes]
rs2031056	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3925072	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3925073	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4238092	0.86[EUR][1000 genomes]
rs4238093	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4417371	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768055	0.96[ASN][1000 genomes]
rs4768057	0.97[ASN][1000 genomes]
rs4768544	0.91[EUR][1000 genomes]
rs4768546	1.00[ASN][1000 genomes]
rs5023324	1.00[ASN][1000 genomes]
rs6582490	1.00[ASN][1000 genomes]
rs73100931	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73100935	0.87[ASN][1000 genomes]
rs73100975	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311847	0.96[ASN][1000 genomes]
rs7312373	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956825	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7957074	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7964465	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7965873	1.00[ASN][1000 genomes]
rs7969641	0.86[EUR][1000 genomes]
rs7971487	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7971628	1.00[ASN][1000 genomes]
rs7974214	0.96[ASN][1000 genomes]
rs7974501	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44324800-44352600	Weak transcription	Left Ventricle	heart
2	chr12:44332200-44353200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr12:44340000-44349600	Weak transcription	Fetal Kidney	kidney
4	chr12:44342000-44367200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr12:44343600-44359400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:44343600-44363400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:44343600-44376800	Weak transcription	Pancreas	Pancrea
8	chr12:44345600-44349800	Weak transcription	Aorta	Aorta
9	chr12:44346000-44357800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:44346200-44363800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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