Variant report

Variant	rs6582490
Chromosome Location	chr12:44329957-44329958
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10506232	0.96[ASN][1000 genomes]
rs10748378	0.81[EUR][1000 genomes]
rs10748379	0.96[ASN][1000 genomes]
rs10748380	0.96[ASN][1000 genomes]
rs10785462	0.81[EUR][1000 genomes]
rs10785463	0.81[EUR][1000 genomes]
rs10785466	0.81[EUR][1000 genomes]
rs10785468	0.87[EUR][1000 genomes]
rs10785469	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10785470	0.96[ASN][1000 genomes]
rs10785471	0.96[ASN][1000 genomes]
rs10785472	0.96[ASN][1000 genomes]
rs10785473	0.96[ASN][1000 genomes]
rs10785474	0.96[ASN][1000 genomes]
rs10785476	0.88[ASN][1000 genomes]
rs10785477	0.96[ASN][1000 genomes]
rs10785478	0.96[ASN][1000 genomes]
rs10785479	0.96[ASN][1000 genomes]
rs10785481	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10785482	1.00[ASN][1000 genomes]
rs10880578	0.80[AFR][1000 genomes]
rs10880585	0.81[EUR][1000 genomes]
rs10880586	0.96[ASN][1000 genomes]
rs10880587	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880588	0.96[ASN][1000 genomes]
rs10880589	0.96[ASN][1000 genomes]
rs10880591	0.96[ASN][1000 genomes]
rs10880597	1.00[ASN][1000 genomes]
rs10880598	1.00[ASN][1000 genomes]
rs10880599	1.00[ASN][1000 genomes]
rs10880600	1.00[ASN][1000 genomes]
rs10880601	1.00[ASN][1000 genomes]
rs10880604	1.00[ASN][1000 genomes]
rs10880605	0.99[ASN][1000 genomes]
rs11182324	0.81[EUR][1000 genomes]
rs11182325	0.81[EUR][1000 genomes]
rs11182327	0.96[ASN][1000 genomes]
rs11182329	0.96[ASN][1000 genomes]
rs11182337	0.96[ASN][1000 genomes]
rs11182339	1.00[ASN][1000 genomes]
rs11182341	0.95[ASN][1000 genomes]
rs11182346	1.00[ASN][1000 genomes]
rs11182358	0.96[ASN][1000 genomes]
rs12305959	1.00[ASN][1000 genomes]
rs12369569	0.96[ASN][1000 genomes]
rs1609548	0.81[EUR][1000 genomes]
rs1609549	0.81[EUR][1000 genomes]
rs1610291	0.81[EUR][1000 genomes]
rs1675781	0.81[EUR][1000 genomes]
rs1675785	0.80[EUR][1000 genomes]
rs1675787	0.81[AFR][1000 genomes]
rs1731432	0.80[AFR][1000 genomes]
rs1881926	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1881927	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031056	0.96[ASN][1000 genomes]
rs2407783	0.81[EUR][1000 genomes]
rs2447113	0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs3925072	0.97[ASN][1000 genomes]
rs3925073	1.00[ASN][1000 genomes]
rs4238089	0.81[EUR][1000 genomes]
rs4238091	0.81[EUR][1000 genomes]
rs4238093	0.96[ASN][1000 genomes]
rs4363674	0.81[EUR][1000 genomes]
rs4417371	1.00[ASN][1000 genomes]
rs4469953	0.81[EUR][1000 genomes]
rs4537822	0.81[EUR][1000 genomes]
rs4572198	0.81[EUR][1000 genomes]
rs4572199	0.81[EUR][1000 genomes]
rs4609659	0.81[EUR][1000 genomes]
rs4768053	0.83[EUR][1000 genomes]
rs4768055	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4768057	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4768538	0.81[EUR][1000 genomes]
rs4768543	0.83[EUR][1000 genomes]
rs4768546	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5019975	0.81[EUR][1000 genomes]
rs5023324	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7295151	0.83[EUR][1000 genomes]
rs73100931	0.96[ASN][1000 genomes]
rs73100935	0.87[ASN][1000 genomes]
rs73100975	1.00[ASN][1000 genomes]
rs7311847	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7312373	1.00[ASN][1000 genomes]
rs7955615	0.81[EUR][1000 genomes]
rs7956825	0.96[ASN][1000 genomes]
rs7957074	0.96[ASN][1000 genomes]
rs7964465	0.92[ASN][1000 genomes]
rs7965240	0.91[EUR][1000 genomes]
rs7965330	0.89[EUR][1000 genomes]
rs7965873	0.94[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971487	0.93[ASN][1000 genomes]
rs7971628	0.89[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7974214	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7974501	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44324800-44352600	Weak transcription	Left Ventricle	heart
2	chr12:44325000-44330600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:44325000-44340800	Weak transcription	Aorta	Aorta
4	chr12:44325000-44341800	Weak transcription	Ovary	ovary
5	chr12:44325200-44342600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:44326600-44347800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr12:44327400-44343000	Weak transcription	Fetal Intestine Small	intestine
8	chr12:44329800-44330200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links