Variant report

Variant	rs7965873
Chromosome Location	chr12:44354797-44354798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10506232	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10748379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10748380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10785462	0.85[MEX][hapmap]
rs10785470	0.96[ASN][1000 genomes]
rs10785471	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10785472	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10785473	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10785474	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10785476	0.88[ASN][1000 genomes]
rs10785477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10785478	0.96[ASN][1000 genomes]
rs10785479	0.96[ASN][1000 genomes]
rs10785481	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10785482	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10880586	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10880587	0.93[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880588	0.96[ASN][1000 genomes]
rs10880589	0.96[ASN][1000 genomes]
rs10880591	0.96[ASN][1000 genomes]
rs10880597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10880598	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10880599	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10880600	1.00[ASN][1000 genomes]
rs10880601	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10880604	1.00[ASN][1000 genomes]
rs10880605	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11182325	0.85[MEX][hapmap]
rs11182327	0.96[ASN][1000 genomes]
rs11182329	0.96[ASN][1000 genomes]
rs11182337	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11182339	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182341	0.95[ASN][1000 genomes]
rs11182346	1.00[ASN][1000 genomes]
rs11182358	0.96[ASN][1000 genomes]
rs12305959	1.00[ASN][1000 genomes]
rs12369569	0.96[ASN][1000 genomes]
rs1609549	0.85[MEX][hapmap]
rs1621279	0.86[ASW][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs1622590	0.86[MEX][hapmap]
rs1675755	0.81[MEX][hapmap]
rs1675772	0.86[MEX][hapmap];0.86[MKK][hapmap]
rs1675781	0.85[MEX][hapmap]
rs1675787	0.86[ASW][hapmap];0.80[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap]
rs1731434	0.86[MEX][hapmap];0.85[MKK][hapmap]
rs1731454	0.86[ASW][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap]
rs1731459	0.85[MEX][hapmap]
rs1881926	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1881927	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031056	0.96[ASN][1000 genomes]
rs2447113	0.89[YRI][hapmap]
rs3925072	0.97[ASN][1000 genomes]
rs3925073	1.00[ASN][1000 genomes]
rs4238093	0.96[ASN][1000 genomes]
rs4363674	0.85[MEX][hapmap]
rs4417371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4609659	0.85[MEX][hapmap]
rs4768053	0.85[MEX][hapmap]
rs4768055	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4768057	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4768546	0.94[CEU][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5023324	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6582490	0.94[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100931	0.96[ASN][1000 genomes]
rs73100935	0.87[ASN][1000 genomes]
rs73100975	1.00[ASN][1000 genomes]
rs7311847	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7312373	1.00[ASN][1000 genomes]
rs7955615	0.86[MEX][hapmap];0.86[MKK][hapmap]
rs7956825	0.96[ASN][1000 genomes]
rs7957074	0.96[ASN][1000 genomes]
rs7964465	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs7971487	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7971516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7971628	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974214	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7974501	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44342000-44367200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:44343600-44359400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:44343600-44363400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:44343600-44376800	Weak transcription	Pancreas	Pancrea
5	chr12:44346000-44357800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:44346200-44363800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:44352000-44363400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:44353800-44358000	Weak transcription	Stomach Mucosa	stomach
9	chr12:44354400-44359000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr12:44354400-44367000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:44354600-44359000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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