Variant report

Variant	rs4238093
Chromosome Location	chr12:44315925-44315926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:44311484..44313107-chr12:44314992..44317607,2	K562	blood:
2	chr12:44158810..44161321-chr12:44313514..44316274,2	K562	blood:
3	chr12:44310016..44313786-chr12:44314229..44318943,4	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10506232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748380	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785473	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785476	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10785477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785481	0.98[ASN][1000 genomes]
rs10785482	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880587	1.00[ASN][1000 genomes]
rs10880588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880597	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880598	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880599	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880600	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880601	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880604	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880605	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182326	0.90[EUR][1000 genomes]
rs11182327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182328	0.90[EUR][1000 genomes]
rs11182329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182339	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182341	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11182345	0.86[EUR][1000 genomes]
rs11182346	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182358	0.93[ASN][1000 genomes]
rs11829881	0.90[EUR][1000 genomes]
rs12301015	0.90[EUR][1000 genomes]
rs12303804	0.90[EUR][1000 genomes]
rs12305959	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12309681	0.90[EUR][1000 genomes]
rs12315094	0.86[EUR][1000 genomes]
rs12369569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881926	1.00[ASN][1000 genomes]
rs1881927	1.00[ASN][1000 genomes]
rs2031056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3925072	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3925073	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4238092	0.86[YRI][hapmap];0.90[EUR][1000 genomes]
rs4417371	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4768055	1.00[ASN][1000 genomes]
rs4768057	0.93[ASN][1000 genomes]
rs4768544	0.94[EUR][1000 genomes]
rs4768546	0.96[ASN][1000 genomes]
rs5023324	0.96[ASN][1000 genomes]
rs6582490	0.96[ASN][1000 genomes]
rs73100931	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100935	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73100975	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7311847	1.00[ASN][1000 genomes]
rs7312373	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7956825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957074	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964465	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7965873	0.96[ASN][1000 genomes]
rs7969641	0.90[EUR][1000 genomes]
rs7971487	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7971628	0.96[ASN][1000 genomes]
rs7974214	1.00[ASN][1000 genomes]
rs7974501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44307400-44324000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44308400-44318400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:44311400-44324600	Weak transcription	Left Ventricle	heart
4	chr12:44314800-44317000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr12:44314800-44317000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:44314800-44317200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:44315200-44324200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:44315400-44316200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr12:44315400-44316800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr12:44315400-44316800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:44315600-44316000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:44315600-44316000	Enhancers	NHLF	lung
13	chr12:44315600-44316400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:44315600-44316600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr12:44315600-44316600	Enhancers	NHDF-Ad	bronchial
16	chr12:44315600-44317000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr12:44315800-44316000	Enhancers	HSMMtube	muscle
18	chr12:44315800-44317000	Enhancers	Pancreatic Islets	Pancreatic Islet

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