The 2.0 version of rSNPBase

Variant report

Variant rs10889110
Chromosome Location chr1:59164512-59164513
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59153600-59164800 Weak transcription Esophagus oesophagus
2 chr1:59153800-59165000 Weak transcription Pancreas Pancrea
3 chr1:59155200-59164600 Weak transcription HSMMtube muscle
4 chr1:59159800-59165000 Weak transcription Small Intestine intestine
5 chr1:59160600-59164800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr1:59160600-59164800 Weak transcription Fetal Muscle Trunk muscle
7 chr1:59160600-59165000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:59160600-59165000 Weak transcription Aorta Aorta
9 chr1:59161200-59164600 Weak transcription Fetal Muscle Leg muscle
10 chr1:59161200-59164800 Weak transcription Left Ventricle heart
11 chr1:59161200-59165000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:59161200-59165000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:59161200-59165000 Weak transcription Lung lung
14 chr1:59161400-59165000 Weak transcription Placenta Placenta
15 chr1:59162200-59164800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr1:59163000-59164600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr1:59163200-59164600 Enhancers Primary T cells fromperipheralblood blood
18 chr1:59163800-59164600 Enhancers Liver Liver
19 chr1:59164000-59164600 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
20 chr1:59164000-59164600 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
21 chr1:59164000-59164600 Enhancers Primary T helper cells fromperipheralblood blood
22 chr1:59164000-59164600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
23 chr1:59164000-59164600 Enhancers Fetal Brain Female brain
24 chr1:59164000-59164600 Enhancers Fetal Lung lung
25 chr1:59164000-59165000 Enhancers Gastric stomach
26 chr1:59164000-59165200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:59164000-59165800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr1:59164000-59165800 Active TSS GM12878-XiMat blood
29 chr1:59164000-59166200 Active TSS Psoas Muscle Psoas
30 chr1:59164200-59164600 Flanking Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
31 chr1:59164200-59164600 Transcr. at gene 5' and 3' H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:59164200-59164600 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
33 chr1:59164200-59164600 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
34 chr1:59164200-59164600 Enhancers Primary hematopoietic stem cells blood
35 chr1:59164200-59164600 Enhancers Primary T killer naive cells fromperipheralblood blood
36 chr1:59164200-59164600 Enhancers Cortex derived primary cultured neurospheres brain
37 chr1:59164200-59164600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
38 chr1:59164200-59164600 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
39 chr1:59164200-59164600 Enhancers Fetal Adrenal Gland Adrenal Gland
40 chr1:59164200-59164600 Enhancers Fetal Heart heart
41 chr1:59164200-59164600 Enhancers Fetal Stomach stomach
42 chr1:59164200-59164600 Enhancers Thymus Thymus
43 chr1:59164200-59164600 Flanking Active TSS HMEC breast
44 chr1:59164200-59164600 Transcr. at gene 5' and 3' NHEK skin
45 chr1:59164200-59164800 Flanking Active TSS H1 Cell Line embryonic stem cell
46 chr1:59164200-59164800 Flanking Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:59164200-59164800 Transcr. at gene 5' and 3' HUES48 Cell Line embryonic stem cell
48 chr1:59164200-59164800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:59164200-59164800 Enhancers Primary monocytes fromperipheralblood blood
50 chr1:59164200-59164800 Enhancers Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015