Variant report

Variant	rs6668605
Chromosome Location	chr1:59179331-59179332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10158502	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10159308	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10889110	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10889111	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10889112	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10889113	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11207292	0.81[EUR][1000 genomes]
rs11207293	0.87[EUR][1000 genomes]
rs11207298	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11803186	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12076049	0.87[EUR][1000 genomes]
rs12092121	0.86[EUR][1000 genomes]
rs12097333	0.86[EUR][1000 genomes]
rs12097517	0.86[EUR][1000 genomes]
rs12139511	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12741968	0.87[EUR][1000 genomes]
rs12755615	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1323280	0.84[EUR][1000 genomes]
rs2064371	0.85[EUR][1000 genomes]
rs2064372	0.86[EUR][1000 genomes]
rs2064374	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2206765	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2223698	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs232775	0.80[AMR][1000 genomes]
rs232776	0.80[AMR][1000 genomes]
rs232781	0.80[AMR][1000 genomes]
rs232791	0.80[AMR][1000 genomes]
rs232851	0.80[AMR][1000 genomes]
rs232861	0.80[AMR][1000 genomes]
rs232869	0.80[AMR][1000 genomes]
rs2746081	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2746082	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2811893	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4506484	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4912370	0.80[EUR][1000 genomes]
rs4912373	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs506078	0.80[AMR][1000 genomes]
rs527445	0.80[AMR][1000 genomes]
rs539141	0.80[AMR][1000 genomes]
rs554318	0.80[AMR][1000 genomes]
rs579110	0.80[AMR][1000 genomes]
rs584284	0.80[AMR][1000 genomes]
rs6587836	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6656037	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6656370	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6656503	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6661709	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6677560	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6680626	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6680750	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6686043	0.84[EUR][1000 genomes]
rs6701772	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59166400-59186200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:59176000-59182800	Weak transcription	HUVEC	blood vessel
3	chr1:59176200-59183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:59176600-59183800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:59176800-59188800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:59177200-59179800	Weak transcription	Fetal Brain Male	brain
7	chr1:59177200-59180400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:59177200-59180400	Weak transcription	HepG2	liver
9	chr1:59177400-59184000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr1:59178600-59179800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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