Variant report

Variant	rs10898895
Chromosome Location	chr11:72741398-72741399
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72740332..72742221-chr11:72743270..72746059,2	K562	blood:
2	chr11:72741325..72744798-chr11:72852592..72854519,3	K562	blood:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10793048	0.82[YRI][hapmap]
rs10793049	0.91[CHB][hapmap];0.84[YRI][hapmap]
rs10793054	0.90[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10793055	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10793056	0.95[YRI][hapmap]
rs10898885	0.82[YRI][hapmap]
rs10898894	0.91[CHB][hapmap];0.95[YRI][hapmap]
rs11235612	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12294533	0.91[CHB][hapmap];0.95[YRI][hapmap]
rs2276379	0.87[CHB][hapmap];0.95[YRI][hapmap]
rs4394861	0.82[YRI][hapmap]
rs6592508	0.95[YRI][hapmap]
rs7129921	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7925466	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7925928	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7936751	0.90[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7937701	0.96[YRI][hapmap]
rs7943424	0.86[YRI][hapmap]
rs9645708	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72722600-72743600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:72722600-72746400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:72724400-72761000	Weak transcription	HSMM	muscle
4	chr11:72730800-72751000	Weak transcription	HSMMtube	muscle
5	chr11:72732400-72741600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:72732800-72744600	ZNF genes & repeats	GM12878-XiMat	blood
7	chr11:72734200-72755200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:72736600-72750200	Weak transcription	Psoas Muscle	Psoas
9	chr11:72737800-72741600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:72739200-72759200	Weak transcription	Aorta	Aorta
11	chr11:72739400-72746200	Weak transcription	Gastric	stomach
12	chr11:72739400-72748200	Weak transcription	Right Ventricle	heart
13	chr11:72739400-72748400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:72739400-72753000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:72739400-72765800	Weak transcription	Spleen	Spleen
16	chr11:72739600-72746000	Weak transcription	Fetal Lung	lung
17	chr11:72739600-72757800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:72739600-72759200	Weak transcription	Osteobl	bone
19	chr11:72739800-72745400	Weak transcription	Liver	Liver
20	chr11:72740000-72741400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr11:72740000-72743400	Weak transcription	Fetal Thymus	thymus
22	chr11:72740000-72748400	Weak transcription	HepG2	liver
23	chr11:72740000-72753200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:72740000-72757400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:72740000-72758400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:72740000-72758800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:72740000-72759200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:72740000-72771800	Weak transcription	Fetal Stomach	stomach
29	chr11:72740400-72741400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr11:72740400-72741400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr11:72740400-72741600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr11:72740600-72741400	Enhancers	Fetal Brain Male	brain
33	chr11:72740800-72741400	Strong transcription	Primary hematopoietic stem cells	blood
34	chr11:72740800-72741400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:72740800-72741400	Enhancers	Fetal Heart	heart
36	chr11:72740800-72742200	Weak transcription	Right Atrium	heart
37	chr11:72740800-72742400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:72740800-72743200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:72740800-72743200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:72740800-72743400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:72740800-72743400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:72740800-72743600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:72740800-72745200	Weak transcription	Thymus	Thymus
44	chr11:72740800-72746200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:72740800-72746200	Weak transcription	Left Ventricle	heart
46	chr11:72740800-72749400	Weak transcription	Fetal Intestine Large	intestine
47	chr11:72740800-72750200	Weak transcription	Ovary	ovary
48	chr11:72740800-72751000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:72740800-72758400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:72741000-72742000	Enhancers	Primary neutrophils fromperipheralblood	blood

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