Variant report

Variant	rs10793056
Chromosome Location	chr11:72760165-72760166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10437750	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10793048	0.86[YRI][hapmap]
rs10793049	0.90[YRI][hapmap]
rs10793054	0.87[CHB][hapmap];0.95[YRI][hapmap]
rs10793055	0.87[CHB][hapmap];0.84[CHD][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10898885	0.86[YRI][hapmap]
rs10898894	0.93[ASW][hapmap];0.92[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10898895	0.95[YRI][hapmap]
rs10898896	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898900	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11235612	0.86[ASW][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs11235651	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12288580	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12294533	0.93[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1982585	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2187494	0.82[YRI][hapmap]
rs2276379	0.93[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4394861	0.86[YRI][hapmap]
rs55671951	0.85[AFR][1000 genomes]
rs6592500	0.86[YRI][hapmap]
rs6592508	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7104158	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7129921	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs7925928	0.86[ASW][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[YRI][hapmap]
rs7936751	0.86[ASW][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.95[YRI][hapmap]
rs7937701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7943424	0.86[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs9645708	0.86[ASW][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72724400-72761000	Weak transcription	HSMM	muscle
2	chr11:72739400-72765800	Weak transcription	Spleen	Spleen
3	chr11:72740000-72771800	Weak transcription	Fetal Stomach	stomach
4	chr11:72741400-72765000	Weak transcription	Fetal Heart	heart
5	chr11:72745600-72761000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
7	chr11:72750600-72765800	Weak transcription	Ovary	ovary
8	chr11:72758400-72760200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr11:72758400-72760200	Enhancers	Brain Anterior Caudate	brain
10	chr11:72758400-72760400	Flanking Active TSS	GM12878-XiMat	blood
11	chr11:72758400-72773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:72758600-72760200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:72758600-72760400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr11:72758600-72760400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr11:72759400-72760200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr11:72759400-72760200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr11:72759400-72760400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr11:72759400-72765800	Weak transcription	HepG2	liver
19	chr11:72759400-72772000	Weak transcription	Fetal Intestine Small	intestine
20	chr11:72759600-72760600	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:72759600-72761600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:72759600-72764000	Enhancers	Primary B cells from peripheral blood	blood
23	chr11:72759600-72771000	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:72759600-72771000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:72759800-72760400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr11:72759800-72761000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:72759800-72761000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:72759800-72761400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:72759800-72761800	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:72759800-72763600	Enhancers	Primary B cells from cord blood	blood
31	chr11:72759800-72765000	Weak transcription	Fetal Lung	lung
32	chr11:72759800-72765600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:72759800-72765800	Weak transcription	Left Ventricle	heart
34	chr11:72759800-72765800	Weak transcription	Small Intestine	intestine
35	chr11:72759800-72771400	Weak transcription	HUVEC	blood vessel
36	chr11:72759800-72771600	Weak transcription	Fetal Thymus	thymus
37	chr11:72759800-72771800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:72759800-72772000	Weak transcription	Aorta	Aorta
39	chr11:72759800-72772000	Weak transcription	Pancreas	Pancrea
40	chr11:72759800-72772200	Weak transcription	Brain Substantia Nigra	brain
41	chr11:72759800-72788400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:72760000-72760200	Weak transcription	Brain Angular Gyrus	brain
43	chr11:72760000-72762000	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:72760000-72768200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:72760000-72772000	Weak transcription	Primary T cells from cord blood	blood
46	chr11:72760000-72772200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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