Variant report

Variant	rs1982585
Chromosome Location	chr11:72782474-72782475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72781352..72782941-chr11:72784676..72786662,2	MCF-7	breast:
2	chr11:72670744..72672393-chr11:72782076..72784290,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10437750	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793055	0.84[AFR][1000 genomes]
rs10793056	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10898894	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898896	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10898900	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11235651	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12288580	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12294533	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2276379	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55671951	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs60355221	0.80[AFR][1000 genomes]
rs6592508	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7104158	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7937701	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9645708	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
2	chr11:72759800-72788400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:72762400-72783600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:72764200-72824600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:72768000-72783200	Weak transcription	Liver	Liver
6	chr11:72768800-72797000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:72770800-72788800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:72771200-72783800	Weak transcription	Hela-S3	cervix
9	chr11:72771600-72799400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:72772000-72783000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:72772400-72783200	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:72772600-72783000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:72772800-72783200	Weak transcription	Primary T cells from cord blood	blood
14	chr11:72773000-72810800	Weak transcription	Fetal Stomach	stomach
15	chr11:72773400-72791000	Weak transcription	Fetal Thymus	thymus
16	chr11:72773400-72810400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:72773600-72783600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:72780400-72782800	Enhancers	GM12878-XiMat	blood
19	chr11:72781000-72783200	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr11:72781000-72784000	Weak transcription	Psoas Muscle	Psoas
21	chr11:72781200-72783000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:72781200-72785800	Enhancers	Primary B cells from cord blood	blood
23	chr11:72781600-72783200	Weak transcription	Fetal Heart	heart
24	chr11:72781800-72783600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:72781800-72783600	Enhancers	A549	lung
26	chr11:72782200-72783200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:72782200-72783600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:72782200-72783600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:72782400-72782600	Enhancers	Lung	lung
30	chr11:72782400-72782800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:72782400-72783200	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links