Variant report

Variant	rs9645708
Chromosome Location	chr11:72819318-72819319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72817328..72819384-chr11:72853152..72854723,2	K562	blood:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10437750	0.86[AFR][1000 genomes]
rs10793054	0.95[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs10793055	0.92[ASW][hapmap];0.95[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10793056	0.86[ASW][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10898894	0.86[CHB][hapmap];0.86[CHD][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10898895	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898896	0.82[AFR][1000 genomes]
rs10898900	0.88[AFR][1000 genomes]
rs12288580	0.83[AFR][1000 genomes]
rs12294533	0.86[CHB][hapmap];0.89[CHD][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1982585	0.86[AFR][1000 genomes]
rs2187494	0.82[YRI][hapmap]
rs2276379	0.91[CHB][hapmap];0.82[CHD][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4394861	0.86[YRI][hapmap]
rs6592500	0.86[YRI][hapmap]
rs6592508	0.86[ASW][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7104158	0.84[AFR][1000 genomes]
rs7129921	0.95[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs7925466	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7925928	1.00[ASW][hapmap];0.95[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes]
rs7936751	1.00[ASW][hapmap];0.87[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes]
rs7937701	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9645708	NEU3	cis	parietal	SCAN
rs9645708	KRTAP5-11	cis	cerebellum	SCAN

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
2	chr11:72764200-72824600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:72782600-72825200	Weak transcription	Lung	lung
4	chr11:72786200-72823600	Weak transcription	Placenta	Placenta
5	chr11:72788200-72825400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:72789200-72825000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:72789200-72825200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:72789400-72825200	Weak transcription	HSMM	muscle
9	chr11:72789400-72825800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:72793200-72824800	Weak transcription	Dnd41	blood
11	chr11:72793600-72850600	Weak transcription	NH-A	brain
12	chr11:72795000-72824800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:72795600-72836000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr11:72798200-72824600	Weak transcription	HepG2	liver
15	chr11:72799200-72825400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:72799400-72829400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:72804400-72820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:72804600-72825200	Weak transcription	HSMMtube	muscle
19	chr11:72806600-72826000	Weak transcription	Fetal Brain Male	brain
20	chr11:72806800-72825400	Weak transcription	Adipose Nuclei	Adipose
21	chr11:72806800-72825600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:72806800-72851000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:72807000-72824600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:72807000-72825200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:72807000-72825200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:72807000-72825200	Weak transcription	Osteobl	bone
27	chr11:72807000-72847800	Weak transcription	Small Intestine	intestine
28	chr11:72807200-72825600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:72807200-72833400	Weak transcription	Brain Substantia Nigra	brain
30	chr11:72807600-72836400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:72807800-72820600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:72807800-72836000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:72808000-72824800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr11:72810400-72824600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:72810600-72824600	Weak transcription	HUVEC	blood vessel
36	chr11:72810800-72824600	Weak transcription	Liver	Liver
37	chr11:72810800-72832200	Weak transcription	Fetal Heart	heart
38	chr11:72810800-72837800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:72811000-72820600	Weak transcription	Fetal Intestine Small	intestine
40	chr11:72811000-72825200	Weak transcription	Left Ventricle	heart
41	chr11:72811000-72851600	Weak transcription	Pancreas	Pancrea
42	chr11:72811200-72824600	Weak transcription	Fetal Thymus	thymus
43	chr11:72811200-72825000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:72811200-72825400	Weak transcription	Ovary	ovary
45	chr11:72811400-72824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:72811400-72825000	Weak transcription	Spleen	Spleen
47	chr11:72813000-72825000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr11:72816400-72821200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:72817800-72821200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:72818600-72836000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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