Variant report

Variant	rs6592508
Chromosome Location	chr11:72784673-72784674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72782635..72785353-chr11:72791682..72794185,2	MCF-7	breast:
2	chr11:72784638..72786554-chr11:72789101..72790627,2	MCF-7	breast:
3	chr11:72783683..72785788-chr11:72789075..72790894,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10437750	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10793049	0.90[YRI][hapmap]
rs10793054	0.87[CHB][hapmap];0.95[YRI][hapmap]
rs10793055	0.87[CHB][hapmap];0.84[CHD][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10793056	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898894	0.93[ASW][hapmap];0.92[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10898895	0.95[YRI][hapmap]
rs10898896	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898900	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11235612	0.86[ASW][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs11235651	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12288580	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12294533	0.93[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1982585	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2187494	0.82[YRI][hapmap]
rs2276379	0.93[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4394861	0.86[YRI][hapmap]
rs55671951	0.83[AFR][1000 genomes]
rs6592500	0.86[YRI][hapmap]
rs7104158	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7129921	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs7925928	0.86[ASW][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[YRI][hapmap]
rs7936751	0.86[ASW][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.95[YRI][hapmap]
rs7937701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7943424	0.86[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs9645708	0.86[ASW][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
2	chr11:72759800-72788400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:72764200-72824600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:72768800-72797000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:72770800-72788800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:72771600-72799400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:72773000-72810800	Weak transcription	Fetal Stomach	stomach
8	chr11:72773400-72791000	Weak transcription	Fetal Thymus	thymus
9	chr11:72773400-72810400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:72781200-72785800	Enhancers	Primary B cells from cord blood	blood
11	chr11:72782600-72825200	Weak transcription	Lung	lung
12	chr11:72783000-72784800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:72783000-72785000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr11:72783000-72785000	Enhancers	Brain Angular Gyrus	brain
15	chr11:72783200-72784800	Enhancers	Primary B cells from peripheral blood	blood
16	chr11:72783200-72784800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:72783200-72785400	Enhancers	Primary T cells from cord blood	blood
18	chr11:72783200-72785600	Enhancers	Liver	Liver
19	chr11:72783200-72798800	Weak transcription	Left Ventricle	heart
20	chr11:72783600-72784800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr11:72783600-72784800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:72783600-72784800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr11:72783600-72785000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:72783600-72786000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr11:72783600-72786000	Enhancers	Fetal Intestine Small	intestine
26	chr11:72783800-72784800	Enhancers	Fetal Heart	heart
27	chr11:72783800-72784800	Enhancers	Fetal Lung	lung
28	chr11:72783800-72784800	Flanking Active TSS	HUVEC	blood vessel
29	chr11:72783800-72784800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr11:72783800-72785200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:72783800-72785200	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr11:72783800-72785200	Enhancers	Dnd41	blood
33	chr11:72783800-72785200	Enhancers	Osteobl	bone
34	chr11:72783800-72785600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr11:72783800-72786000	Enhancers	Fetal Intestine Large	intestine
36	chr11:72783800-72786200	Weak transcription	Stomach Mucosa	stomach
37	chr11:72783800-72786400	Enhancers	HepG2	liver
38	chr11:72784000-72784800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:72784000-72784800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr11:72784000-72784800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:72784000-72785000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:72784000-72785000	Active TSS	GM12878-XiMat	blood
43	chr11:72784200-72784800	Flanking Active TSS	A549	lung
44	chr11:72784200-72787200	Weak transcription	HSMM	muscle
45	chr11:72784200-72788400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:72784200-72797800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:72784200-72798800	Weak transcription	Right Ventricle	heart
48	chr11:72784200-72799000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:72784400-72786200	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr11:72784400-72789200	Weak transcription	HSMMtube	muscle

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