Variant report

Variant	rs7104158
Chromosome Location	chr11:72766197-72766198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10437750	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793055	0.84[AFR][1000 genomes]
rs10793056	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10898894	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898896	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10898900	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235651	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12288580	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12294533	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1982585	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276379	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55671951	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6592508	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937701	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9645708	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72740000-72771800	Weak transcription	Fetal Stomach	stomach
2	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
3	chr11:72758400-72773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:72759400-72772000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:72759600-72771000	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:72759600-72771000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:72759800-72771400	Weak transcription	HUVEC	blood vessel
8	chr11:72759800-72771600	Weak transcription	Fetal Thymus	thymus
9	chr11:72759800-72771800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:72759800-72772000	Weak transcription	Aorta	Aorta
11	chr11:72759800-72772000	Weak transcription	Pancreas	Pancrea
12	chr11:72759800-72772200	Weak transcription	Brain Substantia Nigra	brain
13	chr11:72759800-72788400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:72760000-72768200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:72760000-72772000	Weak transcription	Primary T cells from cord blood	blood
16	chr11:72760000-72772200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:72761400-72768400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:72761400-72774600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:72762000-72771800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:72762400-72783600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:72764200-72824600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:72764600-72766200	Enhancers	Colon Smooth Muscle	Colon
23	chr11:72765000-72766200	Enhancers	Fetal Heart	heart
24	chr11:72765000-72769000	Genic enhancers	Primary B cells from peripheral blood	blood
25	chr11:72765000-72770400	ZNF genes & repeats	GM12878-XiMat	blood
26	chr11:72765400-72766800	Weak transcription	Fetal Lung	lung
27	chr11:72765600-72766600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:72765600-72770800	Weak transcription	Brain Anterior Caudate	brain
29	chr11:72765600-72771000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:72765600-72771000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:72765800-72766200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:72765800-72766200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
33	chr11:72765800-72766200	Enhancers	Ovary	ovary
34	chr11:72765800-72766200	Enhancers	Right Ventricle	heart
35	chr11:72765800-72766200	Enhancers	Small Intestine	intestine
36	chr11:72765800-72766200	Enhancers	Spleen	Spleen
37	chr11:72765800-72766200	Enhancers	HepG2	liver
38	chr11:72765800-72766800	Strong transcription	Primary B cells from cord blood	blood
39	chr11:72766000-72766200	Enhancers	Left Ventricle	heart
40	chr11:72766000-72766400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
41	chr11:72766000-72772000	Weak transcription	Right Atrium	heart
42	chr11:72766000-72772400	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:72766000-72772600	Weak transcription	Fetal Muscle Leg	muscle

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