Variant report

Variant	rs10922310
Chromosome Location	chr1:197829880-197829881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1039287	0.89[EUR][1000 genomes]
rs1039288	0.89[EUR][1000 genomes]
rs10494761	0.86[AMR][1000 genomes]
rs10801621	0.86[AMR][1000 genomes]
rs10922269	0.82[AMR][1000 genomes]
rs10922308	0.98[EUR][1000 genomes]
rs10922309	1.00[EUR][1000 genomes]
rs10922311	1.00[EUR][1000 genomes]
rs10922312	0.95[EUR][1000 genomes]
rs10922314	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11800139	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12062450	0.95[EUR][1000 genomes]
rs12079329	1.00[AMR][1000 genomes]
rs12079525	0.95[EUR][1000 genomes]
rs1499601	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16842055	1.00[EUR][1000 genomes]
rs17567921	1.00[AMR][1000 genomes]
rs17641842	1.00[AMR][1000 genomes]
rs2047540	0.95[EUR][1000 genomes]
rs2047541	0.95[EUR][1000 genomes]
rs2358488	1.00[AMR][1000 genomes]
rs6661330	1.00[AMR][1000 genomes]
rs6685897	1.00[AMR][1000 genomes]
rs74137403	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74137406	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74137408	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7415533	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999662	chr1:197821769-197892803	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv2762214	chr1:197821769-197897496	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	nsv1004130	chr1:197822757-197879728	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197829600-197830400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:197829600-197830800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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