Variant report
| Variant | rs10922314 |
|---|---|
| Chromosome Location | chr1:197837100-197837101 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:197828498..197830779-chr1:197836162..197838765,2 | K562 | blood: | |
| 2 | chr1:197661931..197662561-chr1:197836633..197837195,2 | MCF-7 | breast: | |
| 3 | chr1:197837087..197838981-chr1:197871128..197873334,2 | K562 | blood: | |
| 4 | chr1:197837094..197838066-chr1:197870113..197870986,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000203724 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1039287 | 0.87[EUR][1000 genomes] |
| rs1039288 | 0.87[EUR][1000 genomes] |
| rs10494761 | 0.86[AMR][1000 genomes] |
| rs10801621 | 0.86[AMR][1000 genomes] |
| rs10922308 | 0.93[EUR][1000 genomes] |
| rs10922309 | 0.95[EUR][1000 genomes] |
| rs10922310 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10922311 | 0.95[EUR][1000 genomes] |
| rs10922312 | 1.00[EUR][1000 genomes] |
| rs11800139 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12062450 | 1.00[EUR][1000 genomes] |
| rs12079329 | 1.00[AMR][1000 genomes] |
| rs12079525 | 1.00[EUR][1000 genomes] |
| rs1499601 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16842055 | 0.95[EUR][1000 genomes] |
| rs17567921 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
| rs17641842 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
| rs2047540 | 0.96[EUR][1000 genomes] |
| rs2047541 | 1.00[EUR][1000 genomes] |
| rs2358488 | 1.00[AMR][1000 genomes] |
| rs6661330 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
| rs6685897 | 1.00[AMR][1000 genomes] |
| rs74137403 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs74137406 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs74137408 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7415533 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999662 | chr1:197821769-197892803 | Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv2762214 | chr1:197821769-197897496 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004130 | chr1:197822757-197879728 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:197830800-197838000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
