Variant report

Variant	rs12079329
Chromosome Location	chr1:197774102-197774103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1039287	0.88[EUR][1000 genomes]
rs1039288	0.88[EUR][1000 genomes]
rs10494761	0.86[AMR][1000 genomes]
rs10801621	0.86[AMR][1000 genomes]
rs10922269	0.82[AMR][1000 genomes]
rs10922310	1.00[AMR][1000 genomes]
rs10922314	1.00[AMR][1000 genomes]
rs11800139	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1499601	1.00[AMR][1000 genomes]
rs17567921	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17641842	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2358488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6661330	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6685897	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74137403	0.95[AMR][1000 genomes]
rs74137406	0.95[AMR][1000 genomes]
rs74137408	0.95[AMR][1000 genomes]
rs7415533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947369	chr1:197750549-197778118	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3371310	chr1:197771529-197775727	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3338319	chr1:197773129-197777427	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197771200-197777000	Weak transcription	Gastric	stomach
2	chr1:197771200-197777800	Weak transcription	HepG2	liver
3	chr1:197771600-197780600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:197771600-197784000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:197771800-197776400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:197772000-197777000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:197772000-197778000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:197772200-197776400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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