Variant report

Variant	rs2358488
Chromosome Location	chr1:197784342-197784343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1039287	0.88[EUR][1000 genomes]
rs1039288	0.88[EUR][1000 genomes]
rs10494761	0.86[AMR][1000 genomes]
rs10801621	0.86[AMR][1000 genomes]
rs10922269	0.82[AMR][1000 genomes]
rs10922310	1.00[AMR][1000 genomes]
rs10922314	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs11800139	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12079329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1499601	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17567921	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17641842	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6661330	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6685897	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74137403	0.95[AMR][1000 genomes]
rs74137406	0.95[AMR][1000 genomes]
rs74137408	0.95[AMR][1000 genomes]
rs7415533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197776600-197785400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:197782600-197785600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:197782800-197785200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr1:197783000-197784600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr1:197783200-197784600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:197783800-197784600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:197783800-197784600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:197783800-197784800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:197784000-197785200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:197784000-197785600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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