Variant report

Variant	rs11800139
Chromosome Location	chr1:197810521-197810522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1039287	1.00[EUR][1000 genomes]
rs1039288	1.00[EUR][1000 genomes]
rs10494761	0.86[AMR][1000 genomes]
rs10801621	0.86[AMR][1000 genomes]
rs10922269	0.82[AMR][1000 genomes]
rs10922308	0.87[EUR][1000 genomes]
rs10922309	0.89[EUR][1000 genomes]
rs10922310	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10922311	0.89[EUR][1000 genomes]
rs10922312	0.87[EUR][1000 genomes]
rs10922314	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12062450	0.87[EUR][1000 genomes]
rs12079329	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12079525	0.87[EUR][1000 genomes]
rs1499601	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16842055	0.89[EUR][1000 genomes]
rs17567921	1.00[AMR][1000 genomes]
rs17641842	1.00[AMR][1000 genomes]
rs2047540	0.84[EUR][1000 genomes]
rs2047541	0.87[EUR][1000 genomes]
rs2358488	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6661330	1.00[AMR][1000 genomes]
rs6685897	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs74137403	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74137406	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74137408	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7415533	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009697	chr1:197804294-197825037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197808000-197814400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:197808400-197810600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:197808400-197810800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:197808600-197810600	Weak transcription	NHDF-Ad	bronchial
5	chr1:197808600-197810600	Weak transcription	Osteobl	bone
6	chr1:197808600-197811200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr1:197808600-197811200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:197808600-197811200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:197808800-197812600	Weak transcription	NHEK	skin
10	chr1:197810400-197810800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:197810400-197810800	Enhancers	Colonic Mucosa	Colon
12	chr1:197810400-197810800	Enhancers	K562	blood
13	chr1:197810400-197811800	Enhancers	Fetal Lung	lung
14	chr1:197810400-197812800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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