Variant report

Variant	rs10939708
Chromosome Location	chr4:10111214-10111215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:10110737-10111505	HepG2	liver:	n/a	n/a
2	POLR2A	chr4:10107878-10111552	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr4:10110459-10111489	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr4:10110334-10116119	GM12891	blood:	n/a	n/a
5	POLR2A	chr4:10107812-10120993	GM18505	blood:	n/a	n/a
6	POLR2A	chr4:10110647-10113587	GM12892	blood:	n/a	n/a
7	POLR2A	chr4:10107724-10118160	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr4:10110524-10114580	GM18951	blood:	n/a	n/a
9	POLR2A	chr4:10110739-10111375	GM12878	blood:	n/a	n/a
10	POLR2A	chr4:10108957-10121214	K562	blood:	n/a	n/a
11	POLR2A	chr4:10105830-10118085	GM12878	blood:	n/a	n/a
12	POLR2A	chr4:10107876-10114115	H1-neurons	neurons:	n/a	n/a
13	POLR2A	chr4:10110926-10113815	K562	blood:	n/a	n/a
14	POLR2A	chr4:10109390-10121827	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr4:10110666-10114016	GM12878	blood:	n/a	n/a
16	POLR2A	chr4:10110759-10111333	HepG2	liver:	n/a	n/a
17	POLR2A	chr4:10109340-10121264	GM12891	blood:	n/a	n/a
18	POLR2A	chr4:10107778-10120550	GM12892	blood:	n/a	n/a
19	POLR2A	chr4:10110296-10111290	GM12891	blood:	n/a	n/a
20	POLR2A	chr4:10106170-10121623	GM12878	blood:	n/a	n/a
21	POLR2A	chr4:10106984-10117107	K562	blood:	n/a	n/a
22	POLR2A	chr4:10107221-10113421	HUVEC	blood vessel:	n/a	n/a
23	POLR2A	chr4:10107919-10114029	K562	blood:	n/a	n/a
24	POLR2A	chr4:10105742-10118099	U87	brain:	n/a	n/a
25	POLR2A	chr4:10075125-10121566	GM12878	blood:	n/a	n/a
26	POLR2A	chr4:10107902-10113431	A549	lung:	n/a	n/a
27	POLR2A	chr4:10107879-10124513	HepG2	liver:	n/a	n/a
28	POLR2A	chr4:10111193-10111314	MCF-7	breast:	n/a	n/a
29	POLR2A	chr4:10109976-10121134	MCF10A-Er-Src	breast:	n/a	n/a
30	POLR2A	chr4:10109486-10117130	K562	blood:	n/a	n/a
31	POLR2A	chr4:10110929-10111256	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr4:10107880-10113865	IMR90	lung:	n/a	n/a
33	POLR2A	chr4:10107738-10118165	GM12892	blood:	n/a	n/a
34	POLR2A	chr4:10107890-10116983	GM12891	blood:	n/a	n/a
35	POLR2A	chr4:10091065-10118105	U87	brain:	n/a	n/a
36	POLR2A	chr4:10110697-10113512	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr4:10110488-10118590	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr4:10110315-10121811	K562	blood:	n/a	n/a
39	POLR2A	chr4:10107805-10113559	GM12891	blood:	n/a	n/a
40	USF2	chr4:10111092-10111247	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr4:10105510-10117911	HepG2	liver:	n/a	n/a
42	POLR2A	chr4:10110733-10111397	GM12878	blood:	n/a	n/a
43	POLR2A	chr4:10111195-10111221	ProgFib	skin:	n/a	n/a
44	POLR2A	chr4:10110164-10113450	GM12892	blood:	n/a	n/a
45	POLR2A	chr4:10108725-10113462	GM19193	blood:	n/a	n/a
46	POLR2A	chr4:10111049-10111309	MCF-7	breast:	n/a	n/a
47	POLR2A	chr4:10107720-10122628	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr4:10107739-10121372	GM12892	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:10110778..10113486-chr4:11404692..11406354,2	K562	blood:
2	chr4:10110208..10112839-chr4:10141638..10144449,2	MCF-7	breast:
3	chr4:10097844..10099444-chr4:10110623..10112578,2	MCF-7	breast:
4	chr4:10111136..10113091-chr4:10453721..10455357,2	K562	blood:
5	chr4:10110816..10113089-chr4:10186992..10189110,2	K562	blood:
6	chr4:10109306..10112103-chr6:27832788..27834584,2	MCF-7	breast:
7	chr4:10109894..10126876-chr4:10164648..10190106,79	K562	blood:

No data

Variant related genes	Relation type
WDR1	TF binding region
ENSG00000198374	Chromatin interaction
ENSG00000251296	Chromatin interaction
ENSG00000071127	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11727818	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11732818	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498927	0.87[ASN][1000 genomes]
rs12499240	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502958	0.90[ASN][1000 genomes]
rs12640611	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12640764	0.91[EUR][1000 genomes]
rs12640847	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13130003	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13441	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241469	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241482	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241484	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241485	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34104130	0.87[EUR][1000 genomes]
rs35276762	0.87[ASN][1000 genomes]
rs35995899	0.93[ASN][1000 genomes]
rs3756220	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3756222	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3756226	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775935	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775938	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3796821	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3796822	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3796823	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3806816	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3822237	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822239	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3822245	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3822259	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4263403	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4311315	0.90[ASN][1000 genomes]
rs4337733	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4393994	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4533774	0.93[ASN][1000 genomes]
rs4604059	0.80[ASN][1000 genomes]
rs4697704	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4697706	0.80[ASN][1000 genomes]
rs4697917	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697921	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697922	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62288544	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6820009	0.89[ASN][1000 genomes]
rs717614	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
5	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
6	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
7	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
10	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
12	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
15	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
16	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
17	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
18	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
19	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
20	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
21	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
22	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
23	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
24	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
25	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
26	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
27	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
28	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
29	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
30	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
31	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
32	nsv537031	chr4:10040713-10262258	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
33	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
34	nsv428438	chr4:10058226-10273779	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
35	nsv537032	chr4:10069805-10262258	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
36	nsv537033	chr4:10069805-10297561	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
37	nsv524687	chr4:10080462-10159103	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
38	nsv1003286	chr4:10082156-10230606	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
39	esv16807	chr4:10099819-10234566	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
40	nsv537034	chr4:10103058-10262258	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
41	nsv537035	chr4:10103058-10297561	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10084400-10114000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:10084800-10116600	Genic enhancers	Fetal Muscle Leg	muscle
3	chr4:10090400-10116400	Genic enhancers	Primary T cells fromperipheralblood	blood
4	chr4:10091800-10116800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:10093000-10116800	Genic enhancers	Fetal Thymus	thymus
6	chr4:10093800-10116000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:10098200-10112200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:10100200-10113600	Genic enhancers	Lung	lung
9	chr4:10101000-10116600	Enhancers	Right Atrium	heart
10	chr4:10101200-10111400	Enhancers	Brain Angular Gyrus	brain
11	chr4:10101200-10111800	Weak transcription	Fetal Kidney	kidney
12	chr4:10102200-10114000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:10102600-10112200	Enhancers	Brain Substantia Nigra	brain
14	chr4:10104200-10116000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:10104400-10113000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:10105200-10112200	Weak transcription	Fetal Lung	lung
17	chr4:10105800-10112600	Enhancers	Stomach Mucosa	stomach
18	chr4:10105800-10116000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:10106000-10114600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
20	chr4:10106000-10116600	Genic enhancers	Fetal Stomach	stomach
21	chr4:10106000-10116800	Genic enhancers	Rectal Mucosa Donor 31	rectum
22	chr4:10106600-10113000	Genic enhancers	Spleen	Spleen
23	chr4:10106600-10114400	Genic enhancers	Primary B cells from peripheral blood	blood
24	chr4:10107000-10115800	Enhancers	Fetal Heart	heart
25	chr4:10107200-10116600	Genic enhancers	Thymus	Thymus
26	chr4:10107400-10111800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr4:10107600-10112200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:10108000-10112000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:10108000-10112400	Enhancers	Ovary	ovary
30	chr4:10108000-10112800	Genic enhancers	Dnd41	blood
31	chr4:10108000-10113400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:10108000-10113400	Genic enhancers	Fetal Muscle Trunk	muscle
33	chr4:10108000-10113400	Genic enhancers	Gastric	stomach
34	chr4:10108000-10116800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr4:10108000-10117000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr4:10108200-10113200	Strong transcription	Primary B cells from cord blood	blood
37	chr4:10108200-10115000	Genic enhancers	NHLF	lung
38	chr4:10108200-10115200	Genic enhancers	Colonic Mucosa	Colon
39	chr4:10108200-10116400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:10108400-10112600	Genic enhancers	NHEK	skin
41	chr4:10108600-10111400	Transcr. at gene 5' and 3'	Rectal Smooth Muscle	rectum
42	chr4:10108600-10111600	Genic enhancers	Placenta	Placenta
43	chr4:10108600-10113200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:10108600-10117600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:10108800-10112000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr4:10108800-10116000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:10108800-10116400	Genic enhancers	Duodenum Mucosa	Duodenum
48	chr4:10108800-10116600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr4:10108800-10116600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr4:10109000-10111400	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links